Hg_chrom5_TN10mRNA_10184
Organism: Heterodera glycines Gene Locus: chr5:6054361-6057387 Feature type: polypeptideProtein Sequence
Length: 577
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.705 | 0.887 | 1.04 | 0.299 | 1.242 | 0.889 | 0.722 | 1.213 | 0.924 | 1.265 | 0.709 | 2.141 | 1.589 | 0.9 | 1.026 | 0.842 | 0.597 | 1.155 | 2.133 | 2.039 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9582
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.942
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
KRWALHLHRIWRDLCRRVK
|
— | — | — | — | — | — |
0.004
|
— | — |
0.033
|
0.060
|
0.007
|
0.123
|
0.405
|
0.413
|
0.438
|
0.199
|
0.773
|
0.274
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009757
|
1.000
|
1.000
|
Hsc_gene_25365.t1
|
Hsc_gene_25365.t1;Hsc_gene_25365.t2
|
— |
P19813.1 Trehalase [Oryctolagus cuniculus]
|
KAI1729741.1 trehalase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.861|GO:0005575_0.791|GO:0110165_0.791|GO:0003674_0.790|GO:0008152_0.687|GO:0003824_0.675|GO:0016020_0.639|GO:0071944_0.617|GO:0044238_0.616|GO:0009056_0.607|GO:0016787_0.605|GO:0005886_0.603|GO:0004553_0.569|GO:0016798_0.569|GO:0015927_0.561|GO:0005975_0.546|GO:0005984_0.533|GO:0005991_0.533|GO:0005993_0.533|GO:0009311_0.533|GO:0009313_0.533|GO:0016052_0.533|GO:0046352_0.533
|
IPR001661+11-544_27-539_184-202_255-272_290-307_326-343_369-385_439-455_522-535+|IPR008928+9-545+|IPR012341+4-549+
|
— |
PF01204+27-539+Trehalase
|
— |
PTHR23403+11-544+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-577
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.613
|
67363.790
|
5.055
|
-13.000
|
25.303
|
17.851
|
42.114
|
57.886
|
12.132
|
13.172
|
44.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
1685.179
|
2364.018
|
2377.920
|
2045.801
|
2084.556
|
2342.071
|
2432.888
|
2434.701
|
1111.201
|
508.526
|
766.815
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.220
|
-0.346
|
— | — |
0.183
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.