Hg_chrom5_TN10mRNA_10185
Organism: Heterodera glycines Gene Locus: chr5:6058344-6061995 Feature type: polypeptideProtein Sequence
Length: 639
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.637 | 1.128 | 1.024 | 0.702 | 1.095 | 1.124 | 0.447 | 2.113 | 1.252 | 1.269 | 1.067 | 1.749 | 1.435 | 1.053 | 1.15 | 1.364 | 0.718 | 0.711 | 0.602 | 0.69 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9583
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.919
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKPATKKYTERKRQL,RRNHCCREWEQRKKSL
|
6-27
|
0.957
|
— | — | — | — |
0.000
|
— | — |
0.874
|
0.100
|
0.010
|
0.363
|
0.061
|
0.066
|
0.136
|
0.025
|
0.032
|
0.070
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009758
|
1.000
|
1.000
|
Hsc_gene_25364.t1
|
Hsc_gene_25364.t1
|
— |
Q5RGT6.1 Protein angel homolog 2 [Danio rerio]
|
KAF7634741.1 J domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003824
|
GO:0005575_0.848|GO:0110165_0.848|GO:0005622_0.798|GO:0008150_0.727|GO:0043226_0.721|GO:0016020_0.705|GO:0043229_0.691|GO:0009987_0.687|GO:0005737_0.678|GO:0043227_0.626|GO:0043231_0.602|GO:0003674_0.522|GO:0008152_0.515|GO:0044238_0.512|GO:0043170_0.510
|
IPR005135+264-564+|IPR036691+248-636_255-636+|IPR050410+90-634+
|
— |
PF03372+264-564+Endonuclease/Exonuclease/phosphatase_family
|
— |
PTHR12121+90-634+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-208
|
1.000
|
209-639
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
73107.410
|
7.971
|
16.500
|
29.108
|
12.520
|
52.269
|
47.731
|
16.901
|
12.207
|
45.853
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkturquoise
|
2298.915
|
3720.044
|
2702.143
|
2429.492
|
2251.767
|
1960.084
|
2144.675
|
2566.546
|
2797.356
|
1294.206
|
1938.413
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.692
|
-0.752
|
— |
-0.141
|
-0.185
|
0.139
|
0.284
|
— | — | — | — | — | — |
No JSON data available for plots.