Hg_chrom5_TN10mRNA_10187
Organism: Heterodera glycines Gene Locus: chr5:6063908-6066919 Feature type: polypeptideProtein Sequence
Length: 518
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.516 | 1.392 | 0.807 | 2.13 | 1.126 | 1.139 | 0.873 | 0.772 | 0.729 | 0.678 | 1.55 | 1.476 | 0.59 | 0.78 | 1.615 | 1.296 | 1.171 | 0.702 | 0.891 | 0.511 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9585
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-Not_Clustered
|
0.925
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
NKMRKGAKTPNKKQQQ,KKKRYSAEDKGKKNLKKRT,KKRYSAEDKGKKNLKKRTP,RRHRSVSKSVEKSAERREK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.170
|
0.098
|
0.049
|
0.169
|
0.058
|
0.019
|
0.113
|
0.022
|
0.225
|
0.945
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004128
|
1.000
|
2.000
|
Hsc_gene_25362.t1;Hsc_gene_25362.t2
|
Hsc_gene_25362.t1;Hsc_gene_25362.t2
|
— | — |
KAI1728835.1 shK domain-like domain-containing protein [Ditylenchus destructor]
|
No
|
-0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR003582+206-254_234-253_260-299_261-298_302-337_302-338_303-337_388-423_388-424_389-423_476-517_476-518+
|
SM00254+206-254_260-299_302-338_388-424_476-518+
|
PF01549+234-253_261-298_302-337_388-423_476-517+ShK_domain-like
|
— |
PTHR21724+381-517+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-181
|
1.000
|
182-518
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.769
|
58093.950
|
9.601
|
40.000
|
30.888
|
6.564
|
57.529
|
42.471
|
19.691
|
11.197
|
53.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
200.976
|
97.066
|
80.394
|
46.337
|
132.568
|
213.432
|
162.107
|
179.485
|
193.545
|
392.343
|
307.144
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.505
|
-1.204
|
-0.683
|
1.486
|
0.701
|
-0.388
|
— | — | — | — | — | — | — |
No JSON data available for plots.