Hg_chrom5_TN10mRNA_10188
Organism: Heterodera glycines Gene Locus: chr5:6068930-6070379 Feature type: polypeptideProtein Sequence
Length: 124
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.313 | 1.125 | 0.293 | 0.834 | 0.269 | 0.62 | 0.672 | 1.21 | 1.434 | 1.417 | 0.978 | 1.423 | 1.344 | 1.241 | 0.494 | 0.806 | 1.058 | 0.978 | 2.481 | 1.898 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9586
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.982
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.020
|
0.875
|
0.139
|
0.077
|
0.142
|
0.280
|
0.178
|
0.410
|
0.129
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009759
|
1.000
|
1.000
|
Hsc_gene_25361.t1
|
Hsc_gene_25361.t1
|
— |
O01578.2 Probable mitochondrial pyruvate carrier 2 [Caenorhabditis elegans]
|
KAI1721695.1 putative mitochondrial pyruvate carrier 2 [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0006850
|
GO:0005575_0.895|GO:0110165_0.885|GO:0005622_0.770|GO:0005737_0.770|GO:0016020_0.744|GO:0043226_0.681|GO:0008150_0.676|GO:0043229_0.663|GO:0043227_0.653|GO:0043231_0.645|GO:0009987_0.607|GO:0003674_0.546|GO:0005739_0.513|GO:0051179_0.506
|
IPR005336+27-123+
|
— |
PF03650+27-123+Mitochondrial_pyruvate_carriers
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-124
|
9o9s_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
13876.330
|
9.756
|
8.500
|
14.516
|
16.935
|
33.871
|
66.129
|
11.290
|
3.226
|
50.806
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
645.617
|
317.629
|
549.222
|
609.041
|
944.170
|
783.433
|
723.739
|
724.886
|
193.784
|
934.693
|
617.160
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.561
|
0.802
|
0.257
|
0.600
|
-0.254
|
— | — | — |
-2.376
|
— | — | — | — |
No JSON data available for plots.