Hg_chrom5_TN10mRNA_10189
Organism: Heterodera glycines Gene Locus: chr5:6070651-6071746 Feature type: polypeptideProtein Sequence
Length: 211
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.882 | 1.102 | 0.948 | 0.49 | 1.185 | 1.094 | 1.016 | 0.948 | 1.79 | 0.961 | 0.862 | 1.394 | 1.316 | 0.638 | 1.257 | 1.083 | 0.932 | 0.646 | 0.729 | 0.976 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9587
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.633
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.206
|
0.221
|
0.033
|
0.432
|
0.275
|
0.597
|
0.519
|
0.101
|
0.370
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009760
|
1.000
|
1.000
|
Hsc_gene_25360.t1
|
Hsc_gene_25360.t1
|
F53F10.4a;F53F10.4b;F53F10.4c
|
Q05975.1 Ras-related protein Rab-2 [Lymnaea stagnalis]
|
KAH7727739.1 Small GTPase superfamily [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003924|GO:0005525
|
GO:0005575_0.948|GO:0110165_0.942|GO:0005622_0.883|GO:0005737_0.842|GO:0008150_0.836|GO:0016020_0.819|GO:0043226_0.803|GO:0043229_0.785|GO:0071944_0.732|GO:0005886_0.727|GO:0009987_0.727|GO:0043227_0.725|GO:0043231_0.689|GO:0006810_0.614|GO:0051179_0.614|GO:0051234_0.614|GO:0005773_0.608|GO:0031982_0.548|GO:0012505_0.527|GO:0065007_0.527|GO:0031090_0.505|GO:0050789_0.505
|
IPR001806+2-211_8-168_9-170+|IPR005225+7-160+|IPR027417+1-184_1-185+|IPR050209+3-183+
|
SM00173+4-170+|SM00174+9-170+|SM00175+7-170+|SM00176+12-203+
|
PF00071+8-168+Ras_family
|
G3DSA:3.40.50.300:FF:000275+1-190+Putative_ras-related_protein_Rab-2A
|
PTHR47979+3-183+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
177-211
|
1.000
|
1-176
|
4rke_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.729
|
23547.650
|
6.858
|
1.000
|
26.066
|
10.900
|
48.341
|
51.659
|
13.744
|
12.322
|
48.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
yellow
|
2379.775
|
2535.109
|
2385.845
|
2063.564
|
2575.927
|
3752.251
|
2505.720
|
4223.291
|
1870.962
|
1492.653
|
1654.785
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.316
|
-0.434
|
— |
0.288
|
0.557
|
-0.572
|
— |
-0.610
|
— | — | — | — | — |
No JSON data available for plots.