Hg_chrom5_TN10mRNA_10191
Organism: Heterodera glycines Gene Locus: chr5:6073159-6073674 Feature type: polypeptideProtein Sequence
Length: 95
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.979 | 0.49 | 0.383 | 0.0 | 0.175 | 0.27 | 2.632 | 1.053 | 0.702 | 0.853 | 0.638 | 1.858 | 0.877 | 0.81 | 1.719 | 1.203 | 1.035 | 1.435 | 1.619 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9589
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
16-39
|
0.953
|
— | — | — | — |
0.000
|
— | — |
0.143
|
0.164
|
0.020
|
0.249
|
0.767
|
0.168
|
0.643
|
0.002
|
0.281
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009762
|
1.000
|
1.000
|
Hsc_gene_25358.t1
|
Hsc_gene_25358.t1
|
Y38F2AR.9
|
P60467.2 Protein transport protein Sec61 subunit beta [Canis lupus familiaris]
|
KAF7639059.1 Protein transport protein Sec61 subunit beta [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005784|GO:0006886
|
GO:0005575_0.879|GO:0110165_0.871|GO:0016020_0.794|GO:0005622_0.701|GO:0008150_0.695|GO:0043226_0.695|GO:0071944_0.692|GO:0005737_0.682|GO:0043229_0.678|GO:0005886_0.661|GO:0003674_0.659|GO:0043227_0.651|GO:0043231_0.650|GO:0009987_0.620|GO:0005773_0.552|GO:0012505_0.533|GO:0051179_0.519|GO:0051234_0.516|GO:0005783_0.510
|
IPR016482+50-89+|IPR030671+14-93+
|
— |
PF03911+50-89+Sec61beta_family
|
— |
PTHR13509+14-93+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-51
|
1.000
|
52-95
|
9ygy_E
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.896
|
9673.080
|
12.084
|
10.000
|
17.895
|
9.474
|
35.789
|
64.211
|
14.737
|
3.158
|
63.158
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
3555.736
|
1160.007
|
1700.828
|
2828.344
|
4002.495
|
4594.126
|
2439.403
|
2463.632
|
6753.441
|
3295.452
|
4777.447
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.322
|
1.149
|
0.843
|
0.469
|
0.214
|
-0.904
|
-1.001
|
— | — | — | — | — | — |
No JSON data available for plots.