Hg_chrom5_TN10mRNA_10192
Organism: Heterodera glycines Gene Locus: chr5:6074418-6076003 Feature type: polypeptideProtein Sequence
Length: 250
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.558 | 1.488 | 0.436 | 1.241 | 0.867 | 1.026 | 0.81 | 1.6 | 1.511 | 1.189 | 0.303 | 0.706 | 2.889 | 0.538 | 1.469 | 0.857 | 1.115 | 0.909 | 1.538 | 1.059 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9590
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
KRQK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.135
|
0.075
|
0.005
|
0.158
|
0.179
|
0.302
|
0.294
|
0.011
|
0.709
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009763
|
1.000
|
1.000
|
Hsc_gene_25357.t1
|
Hsc_gene_25357.t1
|
— | — |
KAI1721691.1 membrane-associating domain-containing protein [Ditylenchus destructor]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
— |
IPR008253+80-233+|IPR050578+51-227+
|
— | — | — |
PTHR22776+51-227+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-46
|
1.000
|
47-250
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
29019.270
|
8.235
|
8.000
|
20.000
|
19.200
|
43.200
|
56.800
|
12.400
|
7.600
|
45.600
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
228.115
|
110.603
|
119.303
|
175.479
|
498.580
|
492.249
|
136.948
|
197.960
|
139.353
|
244.315
|
199.331
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.529
|
0.665
|
1.474
|
— |
-1.837
|
-1.426
|
— | — | — | — | — | — |
No JSON data available for plots.