Hg_chrom5_TN10mRNA_10193
Organism: Heterodera glycines Gene Locus: chr5:6076767-6077112 Feature type: polypeptideProtein Sequence
Length: 62
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.75 | 1.5 | 1.466 | 0.0 | 0.806 | 0.827 | 0.96 | 0.806 | 1.075 | 0.872 | 0.978 | 1.898 | 2.688 | 0.0 | 1.317 | 0.461 | 1.058 | 0.733 | 3.722 | 1.423 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9591
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
18-ppJ2_pJ2_J3_J4_Male
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.148
|
0.933
|
0.039
|
0.125
|
0.055
|
0.047
|
0.050
|
0.044
|
0.065
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
KAI6171596.1 Complex III subunit 9 [Aphelenchoides bicaudatus]
|
No
|
0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005750|GO:0006122
|
GO:0005575_0.900|GO:0110165_0.898|GO:0005622_0.752|GO:0016020_0.744|GO:0005737_0.741|GO:0043226_0.700|GO:0043229_0.697|GO:0043227_0.675|GO:0043231_0.675|GO:0031090_0.595|GO:0031967_0.571|GO:0005739_0.564|GO:0005740_0.564|GO:0031966_0.561|GO:0005743_0.553|GO:0019866_0.553
|
IPR008027+1-59_6-57+|IPR036656+1-59_3-62+
|
— |
PF05365+6-57+Ubiquinol-cytochrome_C_reductase,_UQCRX/QCR9_like
|
G3DSA:1.20.5.260:FF:000001+2-61+Cytochrome_b-c1_complex_subunit_9
|
PTHR12980+1-59+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-62
|
8zou_Qi
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.531
|
7399.350
|
7.006
|
0.500
|
27.419
|
20.968
|
46.774
|
53.226
|
14.516
|
12.903
|
43.548
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
grey
|
1983.608
|
1085.990
|
2185.730
|
1430.491
|
1653.239
|
1857.046
|
1579.043
|
2264.274
|
3545.068
|
1498.553
|
2375.631
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.778
|
0.260
|
-0.502
|
0.177
|
0.182
|
-0.224
|
— |
-0.377
|
— | — | — | — | — |
No JSON data available for plots.