Hg_chrom5_TN10mRNA_10194
Organism: Heterodera glycines Gene Locus: chr5:6078199-6078621 Feature type: polypeptideProtein Sequence
Length: 90
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.517 | 0.258 | 0.606 | 2.682 | 1.111 | 1.14 | 0.265 | 0.556 | 1.728 | 1.952 | 0.168 | 2.614 | 2.16 | 1.068 | 1.361 | 0.159 | 0.729 | 1.01 | 2.564 | 1.634 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9592
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.716
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.263
|
0.346
|
0.018
|
0.175
|
0.499
|
0.196
|
0.307
|
0.021
|
0.095
|
0.248
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
Q90WT7.1 Bladder cancer-associated protein [Carassius auratus]
|
KAH7727743.1 Protein Y73E7A.6 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.939|GO:0009987_0.872|GO:0016043_0.726|GO:0071840_0.726|GO:0008219_0.688|GO:0012501_0.688|GO:0006915_0.685|GO:0044085_0.683|GO:0022607_0.681|GO:0006921_0.670|GO:0022411_0.670|GO:0030030_0.670|GO:0030031_0.670|GO:0030262_0.670|GO:0032060_0.670|GO:0097194_0.670|GO:0120031_0.670|GO:0120036_0.670
|
IPR009598+1-68_1-71+
|
SM01396+1-68+
|
PF06726+1-61+Bladder_cancer-related_protein_BC10
|
— |
PTHR13259+1-71+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-90
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.851
|
10852.020
|
4.949
|
-1.500
|
18.889
|
17.778
|
30.000
|
70.000
|
8.889
|
10.000
|
36.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
220.097
|
222.869
|
302.728
|
302.884
|
353.737
|
307.204
|
249.528
|
310.969
|
63.956
|
146.239
|
110.975
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.215
|
0.306
|
— |
0.192
|
— |
-0.292
|
— | — | — | — | — | — | — |
No JSON data available for plots.