Hg_chrom5_TN10mRNA_10197
Organism: Heterodera glycines Gene Locus: chr5:6095236-6096715 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.673 | 0.49 | 0.67 | 0.181 | 0.614 | 1.619 | 0.94 | 1.316 | 1.404 | 1.209 | 2.392 | 1.238 | 1.17 | 0.709 | 1.289 | 0.677 | 0.863 | 1.196 | 0.0 | 0.619 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9595
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKIGGEKNGGERKVQKK,GGEKNGGERKVQKKQQKQVQKNRSKKVPLRK
|
53-73
|
0.998
|
40-60
|
0.997
|
— | — |
0.000
|
— | — |
0.434
|
0.174
|
0.093
|
0.653
|
0.230
|
0.033
|
0.083
|
0.004
|
0.018
|
0.050
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004129
|
2.000
|
1.000
|
Hsc_gene_25354.t1
|
Hsc_gene_25354.t1;Hsc_gene_25354.t2
|
— |
P47991.1 Large ribosomal subunit protein eL6 [Caenorhabditis elegans]
|
KAI3411068.1 60S ribosomal protein L6 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.869|GO:0110165_0.865|GO:0005622_0.752|GO:0043226_0.735|GO:0043229_0.720|GO:0005737_0.671|GO:0016020_0.607|GO:0003674_0.586|GO:0043228_0.544|GO:0043232_0.540|GO:0043227_0.520|GO:0032991_0.516|GO:0043231_0.506
|
IPR000915+20-190_79-190+|IPR008991+38-132+|IPR014722+39-125+|IPR041997+37-190+
|
— |
PF01159+79-190+Ribosomal_protein_L6e
|
G3DSA:2.30.30.30:FF:000014+39-127+60S_ribosomal_protein_L6
|
PTHR10715+20-190+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-190
|
9cai_CE
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.924
|
21465.460
|
11.217
|
30.500
|
32.105
|
8.947
|
50.526
|
49.474
|
24.737
|
7.368
|
41.579
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
lightcyan
|
3160.411
|
912.703
|
1679.331
|
2802.047
|
3024.146
|
2375.301
|
2142.983
|
1641.443
|
5035.998
|
4583.065
|
4777.179
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.649
|
1.481
|
0.848
|
— |
-0.333
|
— |
-0.639
|
0.529
|
— | — | — | — | — |
No JSON data available for plots.