Hg_chrom5_TN10mRNA_10198
Organism: Heterodera glycines Gene Locus: chr5:6104588-6107994 Feature type: polypeptideProtein Sequence
Length: 522
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.98 | 0.891 | 1.324 | 0.661 | 1.277 | 2.161 | 0.753 | 1.341 | 1.107 | 1.217 | 0.726 | 2.141 | 0.426 | 0.958 | 1.916 | 0.876 | 0.628 | 0.493 | 0.737 | 0.282 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9596
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|cell_membrane
|
— |
RRRK,RRKRIGHFGVRDSRRQSRKRKK
|
25-62
|
0.927
|
— | — | — | — |
0.000
|
— | — |
0.373
|
0.179
|
0.008
|
0.527
|
0.239
|
0.150
|
0.326
|
0.029
|
0.648
|
0.017
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009764
|
1.000
|
1.000
|
Hsc_gene_25355.t2
|
Hsc_gene_25355.t1;Hsc_gene_25355.t2
|
— |
Q96I34.1 Protein phosphatase 1 regulatory subunit 16A [Homo sapiens]
|
KAF7639062.1 ANK_REP_REGION domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.775|GO:0110165_0.773|GO:0005622_0.691|GO:0008150_0.690|GO:0009987_0.625|GO:0016020_0.549|GO:0043226_0.524|GO:0005737_0.523|GO:0043229_0.520|GO:0003674_0.517
|
IPR002110+60-89_72-152_93-122_93-125_126-149_126-157_127-142_204-283_220-249_220-252_253-282_253-285_269-283+|IPR036770+24-182_63-297_186-315+|IPR051226+6-493+
|
SM00248+60-89_93-122_126-157_220-249_253-282+
|
PF12796+72-152_204-283+Ankyrin_repeats_(3_copies)
|
— |
PTHR24179+6-493+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24;280-522
|
1.000
|
25-279
|
6c9k_T
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
58991.460
|
6.854
|
3.000
|
31.801
|
6.130
|
54.023
|
45.977
|
16.858
|
14.943
|
45.977
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
2285.253
|
6146.923
|
1356.213
|
1337.553
|
1318.943
|
1704.973
|
1067.476
|
1944.032
|
692.426
|
3900.119
|
2525.394
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.409
|
-2.338
|
— | — |
0.385
|
-0.666
|
— |
-0.724
|
— | — | — | — | — |
No JSON data available for plots.