Hg_chrom5_TN10mRNA_10199
Organism: Heterodera glycines Gene Locus: chr5:6109930-6119149 Feature type: polypeptideProtein Sequence
Length: 1,903
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 1.198 | 0.841 | 0.453 | 1.436 | 1.361 | 0.726 | 1.314 | 0.782 | 0.866 | 1.099 | 1.391 | 0.73 | 1.364 | 1.555 | 1.284 | 1.051 | 0.677 | 0.525 | 0.495 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9597
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.871
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRRR,KTEEG,KRFFERRNRGRWPRK,RRFRNHFERRIRRRGG,KRKKGRPPKHLAKFDRK,RRGGGRRRSSPGRRVGR,RKINCDSTNTIPRRRGG,KEEERMVKREKKKKRKE,RKKGRPPKHLAKFDRKTDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.920
|
0.075
|
0.026
|
0.317
|
0.062
|
0.018
|
0.018
|
0.033
|
0.073
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004130
|
1.000
|
2.000
|
Hsc_gene_25353.t1;Hsc_gene_25353.t2
|
Hsc_gene_25353.t1;Hsc_gene_25353.t2
|
— |
E9Q5F9.1 Histone-lysine N-methyltransferase SETD2 [Mus musculus]
|
KAI1728845.1 SET domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005634|GO:0016279|GO:0042054|GO:0046975
|
GO:0005575_0.955|GO:0110165_0.955|GO:0008150_0.925|GO:0005622_0.906|GO:0009987_0.893|GO:0043226_0.868|GO:0016020_0.850|GO:0043229_0.842|GO:0003674_0.828|GO:0016043_0.756|GO:0043227_0.756|GO:0071840_0.756|GO:0008152_0.752|GO:0043170_0.752|GO:0065007_0.747|GO:0050789_0.733|GO:0043231_0.732|GO:0050794_0.724|GO:0005634_0.690|GO:0044238_0.666|GO:0009058_0.663|GO:0009059_0.663|GO:0010467_0.663|GO:0044237_0.663|GO:0044249_0.663|GO:0019222_0.641|GO:0005488_0.640|GO:0031323_0.638|GO:0003824_0.634|GO:0140096_0.634|GO:0060255_0.627|GO:0006325_0.624|GO:0006338_0.624|GO:0006139_0.615|GO:0016740_0.615|GO:0090304_0.611|GO:0009889_0.607|GO:0031326_0.607|GO:0010468_0.601|GO:0010556_0.601|GO:0008168_0.596|GO:0008276_0.596|GO:0016741_0.596|GO:0140993_0.585|GO:0008170_0.578|GO:0008757_0.578|GO:0016278_0.578|GO:0016279_0.578|GO:0042054_0.575|GO:0140938_0.572|GO:0016070_0.549|GO:0034654_0.537|GO:0141187_0.528|GO:0032774_0.523|GO:0080090_0.513
|
IPR001202+1844-1871+|IPR001214+133-251_133-257_144-251+|IPR003616+258-274+|IPR006560+79-131_79-132_96-130+|IPR042294+42-479+|IPR044437+132-274+|IPR046341+18-288_53-264+
|
SM00317+133-257+|SM00508+258-274+|SM00570+79-132+
|
PF00856+144-251+SET_domain|PF17907+96-130+AWS_domain
|
— |
PTHR46711+42-479+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-54;318-369;576-622;738-1829
|
4.000
|
55-317;370-575;623-737;1830-1903
|
9s3g_O
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
212553.850
|
9.293
|
56.000
|
30.741
|
7.620
|
56.595
|
43.405
|
17.499
|
13.242
|
51.287
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1683.234
|
2097.860
|
1683.246
|
1166.965
|
1307.062
|
1245.398
|
1433.230
|
919.320
|
1784.403
|
2330.943
|
2096.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.548
|
-0.983
|
-0.419
|
— | — |
0.213
|
-0.544
|
0.784
|
— | — | — | — | — |
No JSON data available for plots.