Hg_chrom5_TN10mRNA_10200
Organism: Heterodera glycines Gene Locus: chr5:6119242-6122136 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.808 | 1.194 | 0.851 | 0.208 | 1.636 | 1.511 | 0.575 | 1.813 | 0.671 | 0.939 | 1.03 | 1.155 | 0.545 | 1.191 | 1.233 | 1.446 | 1.362 | 0.847 | 0.232 | 0.355 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9598
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.714
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KTEEG,KEEERMVKREKKKKRKE,KRHVSALVAKCIDPYRRRF
|
— | — | — | — | — | — |
0.000
|
— | — |
0.802
|
0.067
|
0.010
|
0.284
|
0.040
|
0.028
|
0.064
|
0.025
|
0.065
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_25353.t1;Hsc_gene_25353.t2
|
— | — |
KAI1728845.1 SET domain-containing protein [Ditylenchus destructor]
|
No
|
-0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005694|GO:0006355
|
GO:0008150_0.959|GO:0005575_0.938|GO:0110165_0.936|GO:0009987_0.924|GO:0065007_0.908|GO:0005622_0.903|GO:0050789_0.901|GO:0050794_0.886|GO:0016020_0.874|GO:0043226_0.864|GO:0003674_0.853|GO:0043229_0.851|GO:0032501_0.822|GO:0008152_0.816|GO:0043170_0.816|GO:0071840_0.814|GO:0016043_0.812|GO:0019222_0.812|GO:0031323_0.809|GO:0044237_0.809|GO:0009058_0.807|GO:0009059_0.807|GO:0044249_0.807|GO:0060255_0.807|GO:0010467_0.805|GO:0043227_0.796|GO:0009889_0.786|GO:0031326_0.786|GO:0010556_0.782|GO:0010468_0.780|GO:0043231_0.778|GO:0005634_0.759|GO:0006325_0.700|GO:0006338_0.700|GO:0003824_0.679|GO:0140096_0.679|GO:0016740_0.666|GO:0140993_0.658|GO:0008168_0.654|GO:0008170_0.654|GO:0008276_0.654|GO:0008757_0.654|GO:0016278_0.654|GO:0016279_0.654|GO:0016741_0.654|GO:0042054_0.650|GO:0046975_0.650|GO:0140938_0.650|GO:0005488_0.539|GO:0032502_0.492|GO:0048856_0.492|GO:0043228_0.486|GO:0043232_0.482|GO:0005515_0.481|GO:0048518_0.471|GO:0006139_0.468|GO:0044238_0.468|GO:0005737_0.464|GO:0080090_0.464|GO:0090304_0.464|GO:0007275_0.463|GO:0048522_0.460|GO:0016070_0.458|GO:0034654_0.458|GO:0050896_0.458|GO:0032774_0.453|GO:0141187_0.453|GO:0048731_0.447|GO:0030154_0.439|GO:0048869_0.439|GO:0051716_0.437|GO:0019219_0.429|GO:0051179_0.427|GO:0048468_0.425|GO:0009893_0.424|GO:0006351_0.419|GO:0031325_0.417|GO:0010604_0.413|GO:0009891_0.412|GO:0031328_0.412|GO:0051234_0.407|GO:0007399_0.406|GO:0006996_0.404|GO:0048513_0.404|GO:0006810_0.399|GO:0010557_0.399|GO:0031974_0.396|GO:0031981_0.396|GO:0043233_0.396|GO:0070013_0.396|GO:0006366_0.394|GO:0051641_0.394|GO:0009653_0.390|GO:0006950_0.389|GO:0019538_0.389|GO:0042221_0.383|GO:0048583_0.383|GO:0051239_0.383|GO:0009888_0.379|GO:0033036_0.376|GO:0070727_0.376|GO:0007010_0.375|GO:0008104_0.372|GO:0009790_0.370|GO:0032879_0.370|GO:0051649_0.370|GO:0033554_0.369|GO:0007017_0.366|GO:0007049_0.364|GO:0022402_0.364|GO:0051301_0.363|GO:0060429_0.363|GO:0005654_0.361|GO:0010628_0.361|GO:0000280_0.360|GO:0009056_0.360|GO:0009894_0.360|GO:0048285_0.360|GO:0061024_0.360|GO:0043412_0.359|GO:0046907_0.359|GO:0009605_0.358|GO:0036211_0.358|GO:0051049_0.358|GO:0000226_0.357|GO:0007417_0.356|GO:0002376_0.355|GO:0060341_0.355|GO:0000278_0.354|GO:0009792_0.354|GO:0035295_0.354|GO:0043933_0.354|GO:0044419_0.354|GO:0048646_0.354|GO:0048870_0.354|GO:0051240_0.354|GO:0140014_0.354|GO:1903047_0.354|GO:0002009_0.353|GO:0035239_0.353|GO:0048568_0.353|GO:0048729_0.353|GO:0060562_0.353|GO:0006259_0.352|GO:0032880_0.352|GO:0033365_0.352|GO:0051726_0.352|GO:0080134_0.352|GO:0009607_0.351|GO:0009887_0.351|GO:0071705_0.351
|
IPR001202+508-535+|IPR013257+573-646+|IPR038190+552-648+
|
— |
PF08236+573-646+SRI_(Set2_Rpb1_interacting)_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-492;637-662
|
1.000
|
493-636
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.724
|
73479.320
|
6.581
|
1.000
|
30.967
|
7.100
|
60.423
|
39.577
|
16.465
|
14.502
|
52.417
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
steelblue
|
570.566
|
565.415
|
460.672
|
360.881
|
394.478
|
333.574
|
603.744
|
508.927
|
564.559
|
862.424
|
734.767
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.527
|
-0.785
|
-0.242
|
— |
-0.228
|
0.868
|
0.503
|
0.391
|
— | — | — | — | — |
No JSON data available for plots.