SCN Proteipedia

Hg_chrom5_TN10mRNA_10201

Organism: Heterodera glycines Gene Locus: chr5:6122288-6126317 Feature type: polypeptide

Protein Sequence

Length: 663

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.0	0.666	0.494	0.728	0.578	0.696	0.97	0.83	1.24	1.569	0.434	1.686	2.514	0.812	1.016	1.228	0.767	1.097	2.088	0.976	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9599	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	29-J3_J4_Female_Male	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	—	—	—	—	—	—	—	0.000	—	—	0.053	0.123	0.012	0.105	0.184	0.366	0.201	0.002	0.863	0.036

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009765	1.000	1.000	Hsc_gene_25352.t1	Hsc_gene_25352.t1	—	G5EBM5.1 Sodium-dependent transporter snf-5 [Caenorhabditis elegans]	KAI6222769.1 Snf-9 [Aphelenchoides besseyi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0016020	GO:0008150_0.964\|GO:0009987_0.929\|GO:0006810_0.898\|GO:0051179_0.898\|GO:0051234_0.898\|GO:0005575_0.868\|GO:0110165_0.868\|GO:0003674_0.827\|GO:0055085_0.827\|GO:0016020_0.803\|GO:0005215_0.788\|GO:0022857_0.788\|GO:0071944_0.732\|GO:0005886_0.731\|GO:0006811_0.702\|GO:0034220_0.702\|GO:0071705_0.687\|GO:0098660_0.680\|GO:0015075_0.666\|GO:0006812_0.657\|GO:0098655_0.657\|GO:0030001_0.648\|GO:0098662_0.648\|GO:0015318_0.645\|GO:0006814_0.641\|GO:0008324_0.636\|GO:0035725_0.624\|GO:0022890_0.615\|GO:0046873_0.606\|GO:0015081_0.601\|GO:0015711_0.593\|GO:0022804_0.588\|GO:0015291_0.587\|GO:0015293_0.585\|GO:0015294_0.581\|GO:0022853_0.581\|GO:0015849_0.574\|GO:1903825_0.574\|GO:0015370_0.573\|GO:0046942_0.573\|GO:1905039_0.573\|GO:0003333_0.565\|GO:0006865_0.565\|GO:0008514_0.560\|GO:0005342_0.547\|GO:0046943_0.547\|GO:0015171_0.535	IPR000175+15-597_16-590_17-586_25-46_54-73_98-124_253-270_336-356_390-409_470-490_520-540+\|IPR037272+17-586+	—	PF00209+17-586+Sodium:neurotransmitter_symporter_family	—	PTHR11616+15-597+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	615-663	1.000	1-614	2qju_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.830	73948.360	8.754	16.500	15.686	16.742	34.540	65.460	9.502	6.184	49.170

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	turquoise	turquoise	134.853	45.764	95.391	117.010	226.820	296.331	216.312	270.169	0.000	114.556	65.461

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.828	1.217	0.406	0.921	0.400	-0.444	—	—	-7.659	7.728	—	—	—

No JSON data available for plots.

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