SCN Proteipedia

Hg_chrom5_TN10mRNA_10203

Organism: Heterodera glycines Gene Locus: chr5:6129804-6130695 Feature type: polypeptide

Protein Sequence

Length: 154

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.0	1.51	0.59	3.359	0.974	0.333	3.711	1.948	0.289	0.0	0.197	0.764	0.902	0.999	1.988	1.391	0.213	0.394	0.0	0.764	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9601	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	24-J3_Female	0.971

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm\|nucleus	—	—	—	—	—	—	—	—	0.000	—	—	0.641	0.236	0.020	0.635	0.067	0.237	0.117	0.002	0.073	0.381

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009767	1.000	1.000	Hsc_gene_25350.t1	Hsc_gene_25350.t1	—	—	CDJ81324.1 Zinc finger domain containing protein [Haemonchus contortus]	No	0.140

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003676\|GO:0008270	GO:0008150_0.683\|GO:0003674_0.668\|GO:0005488_0.638\|GO:0065007_0.633\|GO:0050789_0.626\|GO:0009987_0.615\|GO:0050794_0.615\|GO:0008152_0.564\|GO:0009058_0.559\|GO:0009059_0.559\|GO:0010467_0.559\|GO:0043170_0.559\|GO:0044237_0.559\|GO:0044249_0.559\|GO:0019222_0.544\|GO:0031323_0.544\|GO:0044238_0.539\|GO:0003676_0.536\|GO:0097159_0.536\|GO:0060255_0.531\|GO:0009889_0.527\|GO:0010556_0.527\|GO:0031326_0.527\|GO:0080090_0.524\|GO:0006139_0.518\|GO:0016070_0.518\|GO:0032774_0.518\|GO:0034654_0.518\|GO:0090304_0.518\|GO:0141187_0.518\|GO:0010468_0.516\|GO:0005575_0.515\|GO:0003723_0.510\|GO:0110165_0.509\|GO:0019219_0.501\|GO:0051252_0.501	IPR001878+5-21_6-21_34-50_35-50_67-83_68-83_100-116_101-116_135-151_136-151+\|IPR036875+2-24_25-84_91-153+	SM00343+5-21_34-50_67-83_100-116_135-151+	PF00098+5-21_34-50_67-83_100-116_135-151+Zinc_knuckle	G3DSA:4.10.60.10:FF:000034+27-55_129-154+Universal_minicircle_sequence_binding_protein_(UMSBP),_putative	PTHR46565+54-116+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-154	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.719	15419.520	7.817	6.000	24.026	9.740	42.857	57.143	14.935	9.091	69.481

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	turquoise	1546.781	411.673	1171.773	1580.293	2802.505	1491.510	3247.678	335.986	16.947	2613.922	1500.933

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	1.276	1.803	0.543	0.795	-0.896	1.133	-2.259	3.416	-7.420	6.758	—	—	—

No JSON data available for plots.

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