Hg_chrom5_TN10mRNA_10205
Organism: Heterodera glycines Gene Locus: chr5:6132161-6137498 Feature type: polypeptideProtein Sequence
Length: 1,221
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.733 | 1.048 | 1.147 | 0.254 | 1.365 | 1.05 | 0.78 | 1.474 | 0.601 | 0.631 | 0.869 | 1.06 | 0.728 | 1.449 | 1.972 | 1.989 | 0.98 | 0.658 | 0.504 | 0.217 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9603
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.952
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RGQKRKR,GGRRRTKK,KKGQWENTTKRRREQR,RRRSIKWTATEVKIRQK,RRHRSRSSSPRNKRRTT,RKRATARDEVDQQRDHRR,RRIRLNFVRKQRKREARKK,RRKSPSADRRYHHHRHNRR
|
40-81
|
0.994
|
20-69
|
0.876
|
— | — |
0.000
|
— | — |
0.887
|
0.075
|
0.027
|
0.230
|
0.047
|
0.011
|
0.070
|
0.021
|
0.089
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009769
|
1.000
|
1.000
|
Hsc_gene_25348.t1
|
Hsc_gene_25348.t1
|
— | — | — |
No
|
-0.410
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
— |
IPR000571+362-389_363-388_364-388+|IPR036855+362-387+|IPR052647+358-502+
|
SM00356+363-388+
|
PF00642+364-388+Zinc_finger_C-x8-C-x5-C-x3-H_type_(and_similar)
|
— |
PTHR46582+358-502+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
85-361;441-1221
|
2.000
|
1-84;362-440
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.952
|
134889.750
|
9.179
|
29.000
|
32.842
|
6.962
|
61.343
|
38.657
|
18.346
|
14.496
|
56.183
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey60
|
5740.993
|
9557.936
|
5715.692
|
3720.001
|
3581.229
|
4283.920
|
3526.095
|
4583.648
|
8694.679
|
5482.639
|
6859.228
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.971
|
-1.499
|
-0.511
|
— |
0.273
|
-0.270
|
— | — | — | — | — | — | — |
No JSON data available for plots.