Hg_chrom5_TN10mRNA_10209
Organism: Heterodera glycines Gene Locus: chr5:6157592-6158333 Feature type: polypeptideProtein Sequence
Length: 123
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.473 | 1.134 | 0.887 | 0.0 | 0.949 | 0.625 | 0.581 | 2.033 | 0.723 | 0.879 | 1.725 | 0.956 | 1.129 | 0.782 | 2.489 | 0.697 | 1.2 | 1.725 | 0.625 | 0.478 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9607
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.578
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.601
|
0.533
|
0.068
|
0.492
|
0.117
|
0.066
|
0.054
|
0.002
|
0.079
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009772
|
1.000
|
1.000
|
Hsc_gene_25341.t1
|
Hsc_gene_25341.t1
|
— |
Q7KF90.1 Large ribosomal subunit protein eL31 [Spodoptera frugiperda]
|
KAH7727791.1 60S ribosomal protein L31-like isoform 1 [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003735|GO:0005840|GO:0006412
|
GO:0005575_0.906|GO:0110165_0.903|GO:0005622_0.819|GO:0043226_0.762|GO:0043229_0.748|GO:0005737_0.729|GO:0043228_0.600|GO:0043232_0.600|GO:0003674_0.577|GO:0005840_0.550|GO:0005829_0.538|GO:0016020_0.535|GO:0032991_0.533
|
IPR000054+3-121_15-97_15-98_16-96+|IPR020052+59-73+|IPR023621+2-121_17-98+
|
SM01380+15-98+
|
PF01198+16-96+Ribosomal_protein_L31e
|
G3DSA:3.10.440.10:FF:000001+11-123+60S_ribosomal_protein_L31
|
PTHR10956+3-121+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-19
|
1.000
|
20-123
|
7oyb_d1
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.861
|
14376.630
|
11.506
|
18.500
|
38.211
|
10.569
|
57.724
|
42.276
|
27.642
|
10.569
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
sienna3
|
7843.623
|
4028.721
|
6622.887
|
11278.781
|
10952.753
|
8599.603
|
6099.829
|
4016.330
|
8479.378
|
8606.728
|
8552.150
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.488
|
1.348
|
0.876
|
— |
-0.334
|
-0.485
|
-1.206
|
0.748
|
— | — | — | — | — |
No JSON data available for plots.