Hg_chrom5_TN10mRNA_10210
Organism: Heterodera glycines Gene Locus: chr5:6158504-6159693 Feature type: polypeptideProtein Sequence
Length: 133
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.787 | 0.874 | 1.504 | 0.519 | 0.877 | 0.578 | 0.537 | 1.88 | 1.504 | 1.524 | 0.797 | 1.769 | 0.209 | 0.723 | 0.921 | 1.289 | 0.863 | 1.253 | 1.157 | 1.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9608
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.900
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.605
|
0.244
|
0.015
|
0.659
|
0.099
|
0.363
|
0.193
|
0.072
|
0.073
|
0.231
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009773
|
1.000
|
1.000
|
Hsc_gene_25340.t1
|
Hsc_gene_25340.t1;Hsc_gene_25340.t2
|
— | — |
KAI1731743.1 nuclear transport factor 2 (NTF2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.220
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006913
|
GO:0005575_0.888|GO:0110165_0.882|GO:0016020_0.808|GO:0005622_0.802|GO:0005737_0.789|GO:0043226_0.747|GO:0043227_0.728|GO:0043229_0.724|GO:0043231_0.716|GO:0032991_0.621|GO:0005634_0.590|GO:0008150_0.574|GO:0031974_0.562|GO:0043233_0.562|GO:0070013_0.561|GO:0031981_0.554|GO:0005654_0.549
|
IPR002075+20-130+|IPR018222+18-131+|IPR032710+14-132+|IPR045875+5-132+
|
— |
PF02136+20-130+Nuclear_transport_factor_2_(NTF2)_domain
|
— |
PTHR12612+5-132+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-133
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.612
|
14919.030
|
5.538
|
-2.500
|
27.068
|
10.526
|
47.368
|
52.632
|
13.534
|
13.534
|
51.128
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
680.391
|
533.889
|
342.907
|
418.317
|
458.246
|
428.708
|
423.862
|
553.934
|
894.269
|
1121.060
|
1023.864
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.868
|
-0.489
|
0.395
|
— | — | — | — | — | — | — | — | — | — |
No JSON data available for plots.