Hg_chrom5_TN10mRNA_10211
Organism: Heterodera glycines Gene Locus: chr5:6159870-6161171 Feature type: polypeptideProtein Sequence
Length: 149
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.936 | 0.936 | 0.976 | 0.231 | 1.119 | 0.516 | 1.518 | 1.007 | 1.193 | 0.907 | 0.712 | 0.395 | 1.678 | 0.774 | 1.233 | 1.055 | 0.66 | 1.525 | 0.0 | 0.987 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9609
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.485
|
0.261
|
0.049
|
0.715
|
0.261
|
0.131
|
0.149
|
0.131
|
0.054
|
0.127
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009774
|
1.000
|
1.000
|
Hsc_gene_25339.t1
|
Hsc_gene_25339.t1
|
— |
Q9P6Q5.1 Probable deoxyuridine 5'-triphosphate nucleotidohydrolase [Schizosaccharomyces pombe 972h-]
|
KAI1723666.1 dUTPase domain-containing protein [Ditylenchus destructor]
|
No
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000287|GO:0004170|GO:0006226|GO:0046081
|
GO:0003674_0.715|GO:0005575_0.622|GO:0110165_0.610|GO:0008150_0.583|GO:0003824_0.557|GO:0005622_0.545|GO:0005737_0.545|GO:0009987_0.504
|
IPR008181+5-143_7-143+|IPR029054+15-143+|IPR033704+27-114+|IPR036157+1-144_5-143+
|
— |
PF00692+15-143+dUTPase
|
G3DSA:2.70.40.10:FF:000004+1-144+Deoxyuridine_triphosphatase
|
PTHR11241+5-143+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
145-149
|
1.000
|
1-144
|
6mjk_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.796
|
15996.010
|
6.234
|
-0.500
|
24.832
|
11.409
|
42.282
|
57.718
|
12.752
|
12.081
|
56.376
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
508.866
|
117.067
|
96.112
|
569.803
|
782.645
|
476.103
|
961.343
|
196.823
|
98.575
|
952.398
|
586.474
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.519
|
2.145
|
2.680
|
0.425
|
-0.702
|
1.025
|
-1.392
|
2.436
|
-3.386
|
— | — | — | — |
No JSON data available for plots.