SCN Proteipedia

Hg_chrom5_TN10mRNA_10214

Organism: Heterodera glycines Gene Locus: chr5:6166936-6167756 Feature type: polypeptide

Protein Sequence

Length: 179

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.455	0.78	1.117	0.193	1.304	0.43	0.665	0.559	0.869	1.208	1.016	0.986	1.552	0.967	1.824	0.798	1.191	0.762	2.578	2.3	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9612	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	6-pJ2_J3_J4_Male	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	mitochondrial_transit_peptide	mitochondrion	—	—	—	—	—	—	—	—	0.000	—	—	0.035	0.953	0.015	0.151	0.064	0.033	0.044	0.005	0.026	0.007

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004127	2.000	1.000	Hsc_gene_25336.t1	Hsc_gene_25336.t1;Hsc_gene_25363.t1	—	—	KAF7624797.1 Cytochrome-c oxidase [Meloidogyne graminicola]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005751\|GO:0006123	GO:0008150_0.925\|GO:0005575_0.899\|GO:0110165_0.897\|GO:0009987_0.863\|GO:0003674_0.843\|GO:0016020_0.833\|GO:0003824_0.731\|GO:0051179_0.726\|GO:0006810_0.721\|GO:0051234_0.721\|GO:0055085_0.683\|GO:0006811_0.678\|GO:0034220_0.678\|GO:0098660_0.676\|GO:0006812_0.675\|GO:0098655_0.675\|GO:0098662_0.675\|GO:1902600_0.670\|GO:0016491_0.669\|GO:0005215_0.657\|GO:0022857_0.656\|GO:0004129_0.650\|GO:0008324_0.650\|GO:0009055_0.650\|GO:0015075_0.650\|GO:0015078_0.650\|GO:0015318_0.650\|GO:0015399_0.650\|GO:0015453_0.650\|GO:0016675_0.650\|GO:0022804_0.650\|GO:0022853_0.650\|GO:0022890_0.650\|GO:0032991_0.640\|GO:1902494_0.569\|GO:0098796_0.565\|GO:0005622_0.553\|GO:0045277_0.540\|GO:0070069_0.540\|GO:0098803_0.540\|GO:1902495_0.540\|GO:1990204_0.540\|GO:1990351_0.540\|GO:0005737_0.537\|GO:0043226_0.530\|GO:0043229_0.516	IPR004203+18-178_34-172_43-178+\|IPR036639+34-178_39-179+	—	PF02936+43-178+Cytochrome_c_oxidase_subunit_IV	G3DSA:1.10.442.10:FF:000001+34-179+Cytochrome_c_oxidase_subunit_4_isoform_1	PTHR10707+18-178+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-179	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.713	21464.350	9.017	4.000	30.726	17.877	48.603	51.397	16.760	13.966	42.458

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	grey60	pink	3164.198	1524.847	2286.180	2329.932	3303.808	2830.216	1927.815	2789.082	2152.134	5857.310	4269.377

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.354	0.475	0.136	0.472	-0.208	-0.544	—	-0.390	—	—	—	—	—

No JSON data available for plots.

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