Hg_chrom5_TN10mRNA_10217
Organism: Heterodera glycines Gene Locus: chr5:6183882-6184519 Feature type: polypeptideProtein Sequence
Length: 150
(Signal peptide: 1-15)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.62 | 0.775 | 0.606 | 1.379 | 0.556 | 1.88 | 0.556 | 0.333 | 1.037 | 1.802 | 0.606 | 2.353 | 2.963 | 0.256 | 1.769 | 1.143 | 0.984 | 0.707 | 1.026 | 0.392 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9615
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
lysosome_vacuole
|
mitochondria
|
— |
28-55
|
0.957
|
— | — |
1-15
|
0.929
|
0.737
|
3.000
|
3.000
|
0.066
|
0.216
|
0.014
|
0.147
|
0.368
|
0.642
|
0.510
|
0.004
|
0.414
|
0.032
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004132
|
2.000
|
1.000
|
Hsc_gene_25335.t1
|
Hsc_gene_25335.t1
|
— |
P98194.3 Calcium-transporting ATPase type 2C member 1 [Homo sapiens]
|
KAK6009136.1 cation transporting ATPase [Ostertagia ostertagi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.938|GO:0009987_0.906|GO:0005575_0.811|GO:0110165_0.811|GO:0051179_0.788|GO:0051234_0.782|GO:0006810_0.778|GO:0016020_0.768|GO:0005622_0.710|GO:0043226_0.690|GO:0005886_0.678|GO:0071944_0.678|GO:0043229_0.676|GO:0043227_0.658|GO:0043231_0.656|GO:0005737_0.640|GO:0006811_0.601|GO:0006812_0.592|GO:0030001_0.590|GO:0006816_0.582|GO:0005773_0.571|GO:0012505_0.570|GO:0003674_0.562|GO:0065007_0.558|GO:0050789_0.537
|
IPR006068+6-114+|IPR023298+19-118+
|
— |
PF00689+6-114+Cation_transporting_ATPase,_C-terminus
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
149-150
|
1.000
|
1-148
|
7yam_A
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.515
|
17481.550
|
10.128
|
9.500
|
20.000
|
14.000
|
44.667
|
55.333
|
13.333
|
6.667
|
40.667
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
lightyellow
|
100.245
|
10.594
|
14.922
|
9.856
|
17.566
|
12.736
|
193.291
|
209.871
|
4.146
|
259.649
|
150.148
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.797
|
— |
3.931
|
3.940
|
— |
-6.180
|
— |
-3.669
|
— | — |