Hg_chrom5_TN10mRNA_10218
Organism: Heterodera glycines Gene Locus: chr5:6187371-6187966 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.939 | 0.722 | 1.242 | 0.857 | 0.828 | 1.752 | 0.592 | 1.553 | 1.242 | 1.007 | 0.376 | 1.461 | 1.553 | 1.075 | 1.394 | 0.71 | 1.12 | 1.318 | 0.0 | 0.913 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9616
|
— | — |
3.333
|
5.000
|
5.000
|
1.000
|
1.000
|
5.000
|
5.000
|
3.000
|
2.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.668
|
0.078
|
0.091
|
0.688
|
0.084
|
0.105
|
0.105
|
0.020
|
0.098
|
0.029
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000551
|
6.000
|
1.000
|
Hsc_gene_15815.t1
|
Hsc_gene_15815.t1
|
— |
P48484.1 Serine/threonine-protein phosphatase PP1 isozyme 4 [Arabidopsis thaliana]
|
KAF7638975.1 Serine/threonine-protein phosphatase [Meloidogyne graminicola]
|
XP_006294610
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016787
|
GO:0008150_0.815|GO:0003674_0.804|GO:0005575_0.764|GO:0110165_0.753|GO:0009987_0.749|GO:0005622_0.666|GO:0003824_0.664|GO:0005737_0.634|GO:0016787_0.608|GO:0140096_0.598|GO:0016788_0.592|GO:0016020_0.578|GO:0016791_0.578|GO:0042578_0.578|GO:0004721_0.573|GO:0065007_0.570|GO:0050789_0.557|GO:0050794_0.540
|
IPR004843+86-154+|IPR006186+58-161_86-113_115-142_148-161_149-154+|IPR029052+14-161_58-160+|IPR031675+39-83+|IPR050341+42-161+
|
SM00156+58-161+
|
PF00149+86-154+Calcineurin-like_phosphoesterase|PF16891+39-83+Serine-threonine_protein_phosphatase_N-terminal_domain
|
— |
PTHR11668+42-161+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
5jpf_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.611
|
18118.610
|
5.979
|
-1.500
|
24.224
|
11.801
|
45.963
|
54.037
|
12.422
|
11.801
|
51.553
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
330.529
|
4.692
|
14.924
|
39.874
|
79.582
|
964.132
|
54.343
|
2653.963
|
0.000
|
16.748
|
9.571
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.435
|
2.955
|
1.532
|
0.968
|
3.611
|
-4.140
|
1.349
|
-5.465
|
— |
6.174
|
— | — | — |
No JSON data available for plots.