SCN Proteipedia

Hg_chrom5_TN10mRNA_10219

Organism: Heterodera glycines Gene Locus: chr5:6190305-6196181 Feature type: polypeptide

Protein Sequence

Length: 1,078

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.874	1.338	0.793	0.672	0.989	1.023	1.049	0.696	1.484	1.229	0.731	1.801	1.237	0.66	1.136	1.1	0.912	1.251	0.357	0.355	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9617	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	16-Females_and_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	lysosome_vacuole	—	RKSGAKKRKQK	—	—	—	—	—	—	0.000	—	—	0.111	0.156	0.019	0.200	0.445	0.647	0.484	0.035	0.489	0.022

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004132	2.000	1.000	Hsc_gene_25335.t1	Hsc_gene_25335.t1	—	P98194.3 Calcium-transporting ATPase type 2C member 1 [Homo sapiens]	KAI1721709.1 e1-E2 ATPase domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000166\|GO:0005215\|GO:0005524\|GO:0016020\|GO:0016887	GO:0008150_0.899\|GO:0005575_0.842\|GO:0110165_0.839\|GO:0009987_0.823\|GO:0016020_0.790\|GO:0071944_0.767\|GO:0005886_0.755\|GO:0051179_0.741\|GO:0006810_0.738\|GO:0051234_0.738\|GO:0005622_0.679\|GO:0003674_0.665\|GO:0043226_0.645\|GO:0043229_0.630\|GO:0005737_0.617\|GO:0043227_0.601\|GO:0043231_0.589\|GO:0006811_0.580\|GO:0006812_0.558\|GO:0030001_0.554\|GO:0055085_0.541\|GO:0005773_0.514	IPR001757+382-505_654-672_757-867_758-774_786-802_817-842+\|IPR004014+145-219_148-214+\|IPR006068+870-1042+\|IPR008250+256-379+\|IPR018303+484-490+\|IPR023214+479-830+\|IPR023298+148-1046+\|IPR023299+489-688_492-691+\|IPR036412+480-888+\|IPR044492+463-836+	SM00831+145-219+	PF00122+254-460+E1-E2_ATPase\|PF00689+870-1042+Cation_transporting_ATPase,_C-terminus\|PF00690+148-214+Cation_transporter/ATPase,_N-terminus\|PF00702+681-799+haloacid_dehalogenase-like_hydrolase\|PF13246+554-633+Cation_transport_ATPase_(P-type)	G3DSA:2.70.150.10:FF:000008+236-383+Calcium-transporting_ATPase	PTHR42861+150-1044+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-81;1077-1078	1.000	82-1076	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.802	117104.480	7.491	8.500	22.078	7.514	45.083	54.917	11.781	10.297	53.340

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	tan	1976.823	2125.125	1920.694	1435.655	1959.270	2098.289	4821.371	3477.991	2092.603	389.751	1119.545

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.376	-0.703	-0.311	0.417	—	1.210	0.627	0.613	2.300	—	2.512	—	—

No JSON data available for plots.

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