Hg_chrom5_TN10mRNA_10225
Organism: Heterodera glycines Gene Locus: chr5:6217619-6222655 Feature type: polypeptideProtein Sequence
Length: 1,129
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.164 | 0.7 | 0.982 | 0.886 | 1.166 | 1.295 | 0.612 | 1.594 | 0.827 | 1.676 | 0.631 | 1.511 | 1.206 | 0.835 | 1.464 | 0.86 | 0.813 | 0.966 | 0.749 | 0.469 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9623
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
lysosome_vacuole
|
— |
KRRSATVNEQKKKDD,KKKDDPEKLTFVKKRLD
|
87-107
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.388
|
0.097
|
0.021
|
0.412
|
0.143
|
0.584
|
0.242
|
0.049
|
0.078
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009780
|
1.000
|
1.000
|
Hsc_gene_25328.t1
|
Hsc_gene_25328.t1
|
— |
Q23194.4 Vacuolar protein sorting-associated protein 18 homolog [Caenorhabditis elegans]
|
KAF7637076.1 Pep3_Vps18 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.908|GO:0005575_0.902|GO:0110165_0.898|GO:0005622_0.821|GO:0009987_0.790|GO:0005737_0.670|GO:0016043_0.641|GO:0071840_0.641|GO:0006996_0.585|GO:0016020_0.578|GO:0051179_0.544|GO:0071944_0.541|GO:0006810_0.534|GO:0051234_0.534|GO:0005886_0.530|GO:0043226_0.517
|
IPR007810+11-395+
|
— |
PF05131+11-395+Pep3/Vps18/deep_orange_beta-propeller_domain
|
— |
PTHR23323+21-1122+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1129
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
126442.140
|
6.776
|
6.000
|
26.926
|
10.097
|
45.970
|
54.030
|
14.526
|
12.400
|
47.830
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1454.940
|
1754.860
|
1340.089
|
1329.186
|
1253.699
|
1137.534
|
1464.414
|
904.535
|
764.709
|
2347.713
|
1669.283
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.619
|
-0.538
|
— |
-0.117
|
— |
0.374
|
-0.435
|
0.837
|
— | — | — | — | — |
No JSON data available for plots.