Hg_chrom5_TN10mRNA_10226
Organism: Heterodera glycines Gene Locus: chr5:6222809-6223440 Feature type: polypeptideProtein Sequence
Length: 118
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.182 | 0.197 | 0.616 | 0.292 | 0.989 | 0.652 | 1.11 | 0.847 | 0.753 | 1.145 | 3.21 | 0.997 | 0.235 | 0.815 | 0.692 | 0.847 | 0.834 | 1.156 | 0.652 | 0.748 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9624
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-pJ2_J3_J4
|
0.975
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
TSKKTDPKGGKAAPAKKKEGGGGGKAKKKKWSKGKVR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.552
|
0.106
|
0.103
|
0.528
|
0.168
|
0.064
|
0.203
|
0.000
|
0.110
|
0.074
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009781
|
1.000
|
1.000
|
Hsc_gene_25327.t1
|
Hsc_gene_25327.t1
|
— |
P52821.1 Small ribosomal subunit protein eS25 [Caenorhabditis elegans]
|
KAH7729333.1 40S ribosomal protein [Aphelenchus avenae]
|
No
|
-0.270
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.945|GO:0110165_0.944|GO:0005622_0.872|GO:0043226_0.814|GO:0043229_0.803|GO:0005737_0.782|GO:0003674_0.695|GO:0043228_0.674|GO:0043232_0.661|GO:0005829_0.632|GO:0003735_0.585|GO:0005198_0.585|GO:0005840_0.585|GO:0022626_0.574
|
IPR004977+1-114_15-112+
|
— |
PF03297+15-112+S25_ribosomal_protein
|
G3DSA:3.30.63.20:FF:000001+28-116+40S_ribosomal_protein_S25
|
PTHR12850+1-114+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-39;117-118
|
1.000
|
40-116
|
9cai_AZ
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.910
|
12831.200
|
10.860
|
19.000
|
35.593
|
5.932
|
50.000
|
50.000
|
26.271
|
9.322
|
47.458
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
6958.814
|
3174.965
|
5352.334
|
11534.975
|
13025.445
|
10700.303
|
4702.023
|
2262.542
|
4946.037
|
7703.062
|
6521.480
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.524
|
1.724
|
1.217
|
0.143
|
-0.268
|
-1.176
|
-2.348
|
1.199
|
— |
1.378
|
— | — | — |
No JSON data available for plots.