Hg_chrom5_TN10mRNA_10229
Organism: Heterodera glycines Gene Locus: chr5:6226350-6228912 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.935 | 1.271 | 0.76 | 2.883 | 0.375 | 1.649 | 1.148 | 0.161 | 1.0 | 0.695 | 0.244 | 0.946 | 1.34 | 1.608 | 1.837 | 0.965 | 0.685 | 0.536 | 1.484 | 1.135 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9626
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KRVPPPSSAPFRPRRQ
|
6-26
|
0.967
|
41-63
|
0.999
|
— | — |
0.014
|
— | — |
0.058
|
0.104
|
0.036
|
0.224
|
0.047
|
0.114
|
0.121
|
0.010
|
0.202
|
0.921
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004134
|
2.000
|
1.000
|
Hsc_gene_25325.t1
|
— | — | — |
CDJ87359.1 Protein Y41D4A.1 [Haemonchus contortus]
|
No
|
-0.300
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR006150+158-189_259-307+
|
SM00289+158-189_259-307+
|
— | — |
PTHR34150+66-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-311
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.946
|
34334.040
|
8.423
|
13.500
|
17.363
|
10.932
|
40.193
|
59.807
|
10.932
|
6.431
|
58.521
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
467.497
|
312.493
|
206.923
|
109.719
|
82.260
|
146.350
|
42.533
|
657.760
|
936.908
|
758.355
|
834.878
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.824
|
-1.647
|
-0.807
|
-0.446
|
0.845
|
-1.770
|
2.070
|
-3.808
|
— |
-2.925
|
— | — | — |
No JSON data available for plots.