Hg_chrom5_TN10mRNA_10230
Organism: Heterodera glycines Gene Locus: chr5:6229274-6232726 Feature type: polypeptideProtein Sequence
Length: 429
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 1.193 | 0.763 | 0.884 | 1.01 | 1.255 | 0.583 | 0.932 | 1.243 | 1.323 | 1.166 | 1.645 | 1.425 | 1.076 | 1.332 | 0.899 | 0.535 | 0.989 | 0.359 | 0.617 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9627
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.851
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
KRKH,RKKRK
|
14-34
|
1.000
|
1-41
|
1.000
|
— | — |
0.000
|
— | — |
0.110
|
0.957
|
0.023
|
0.228
|
0.023
|
0.041
|
0.061
|
0.032
|
0.047
|
0.058
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009783
|
1.000
|
1.000
|
Hsc_gene_25324.t1
|
Hsc_gene_25324.t1
|
— |
Q8R3F5.3 Malonyl-CoA-acyl carrier protein transacylase, mitochondrial [Mus musculus]
|
KAH7727481.1 ADP-specific Phosphofructokinase/Glucokinase conserved region family protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016740
|
GO:0005575_0.780|GO:0110165_0.769|GO:0008150_0.721|GO:0005622_0.719|GO:0005737_0.647|GO:0009987_0.599|GO:0016020_0.578|GO:0008152_0.576|GO:0009058_0.555|GO:0003674_0.536|GO:0043226_0.520|GO:0043229_0.505
|
IPR001227+121-410+|IPR014043+121-386_121-426+|IPR016035+118-427+|IPR052760+108-424+
|
SM00827+121-426+
|
PF00698+121-386+Acyl_transferase_domain
|
— |
PTHR47170+108-424+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-78
|
1.000
|
79-429
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.801
|
48305.120
|
9.756
|
21.000
|
26.340
|
9.557
|
45.921
|
54.079
|
16.084
|
10.256
|
47.086
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
970.442
|
965.522
|
883.916
|
1065.399
|
1197.592
|
857.362
|
1062.336
|
757.441
|
828.227
|
1078.427
|
971.198
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.357
|
— |
0.378
|
0.137
|
-0.468
|
0.320
|
-0.283
|
0.630
|
— | — | — | — | — |
No JSON data available for plots.