Hg_chrom5_TN10mRNA_10231
Organism: Heterodera glycines Gene Locus: chr5:6232841-6235222 Feature type: polypeptideProtein Sequence
Length: 499
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.862 | 1.165 | 0.911 | 0.346 | 0.802 | 1.13 | 0.596 | 2.104 | 1.737 | 1.381 | 0.668 | 2.004 | 1.169 | 0.925 | 1.022 | 1.088 | 0.591 | 0.972 | 1.079 | 1.238 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9628
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.537
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.120
|
0.238
|
0.014
|
0.161
|
0.772
|
0.303
|
0.644
|
0.005
|
0.152
|
0.326
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009784
|
1.000
|
1.000
|
Hsc_gene_25323.t1
|
Hsc_gene_25323.t1
|
— |
Q86S40.1 Probable ADP-dependent glucokinase [Caenorhabditis elegans]
|
KAF7640259.1 PKS_AT domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005975|GO:0016773
|
GO:0008150_0.943|GO:0003674_0.864|GO:0008152_0.818|GO:0044238_0.801|GO:0003824_0.780|GO:0044281_0.717|GO:0016740_0.702|GO:0005975_0.682|GO:0005996_0.670|GO:0006006_0.670|GO:0019318_0.670|GO:0016772_0.662|GO:0016301_0.656|GO:0016773_0.655|GO:0043843_0.650|GO:0005575_0.611|GO:0110165_0.600|GO:0005622_0.548|GO:0009987_0.545|GO:0016020_0.535|GO:0005737_0.505
|
IPR007666+11-491_38-495_60-488+|IPR029056+51-490_124-492+
|
— |
PF04587+60-488+ADP-specific_Phosphofructokinase/Glucokinase_conserved_region
|
— |
PTHR21208+11-491+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-499
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.678
|
56709.290
|
7.325
|
8.500
|
23.447
|
14.028
|
44.088
|
55.912
|
13.627
|
9.820
|
45.892
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellow
|
1096.296
|
1057.756
|
952.749
|
887.438
|
1068.255
|
1089.745
|
1855.110
|
1426.956
|
1145.870
|
810.141
|
954.025
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.380
|
-0.390
|
— |
0.236
|
— |
0.778
|
0.285
|
0.521
|
— | — | — | — | — |
No JSON data available for plots.