Hg_chrom5_TN10mRNA_10233
Organism: Heterodera glycines Gene Locus: chr5:6239144-6244287 Feature type: polypeptideProtein Sequence
Length: 542
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.073 | 1.201 | 0.772 | 0.763 | 0.707 | 1.703 | 0.593 | 2.122 | 1.189 | 0.997 | 0.839 | 1.519 | 1.179 | 1.1 | 1.694 | 0.975 | 0.968 | 0.783 | 0.142 | 0.543 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9630
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.511
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— |
RRQKHRRMAKKMYEKARDRAER
|
35-57
|
0.987
|
19-42
|
0.929
|
— | — |
0.230
|
— | — |
0.119
|
0.445
|
0.112
|
0.181
|
0.083
|
0.076
|
0.214
|
0.351
|
0.292
|
0.919
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009786
|
1.000
|
1.000
|
Hsc_gene_25319.t1
|
Hsc_gene_25319.t1
|
— | — |
KAI6243104.1 DB domain-containing protein [Aphelenchoides fujianensis]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR002602+430-529+
|
— |
PF01682+430-529+DB_module
|
— |
PTHR46705+407-537+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
121-172;211-271;331-399
|
4.000
|
1-120;173-210;272-330;400-542
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.749
|
60893.550
|
10.429
|
40.500
|
26.568
|
10.517
|
51.107
|
48.893
|
18.081
|
8.487
|
49.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
448.774
|
296.300
|
329.918
|
177.289
|
194.099
|
1320.417
|
391.518
|
735.508
|
576.142
|
239.386
|
383.710
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.878
|
-0.787
|
— |
2.782
|
-1.745
|
-0.953
|
-0.766
|
— | — | — | — | — |
No JSON data available for plots.