Hg_chrom5_TN10mRNA_10235
Organism: Heterodera glycines Gene Locus: chr5:6244858-6247541 Feature type: polypeptideProtein Sequence
Length: 522
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.203 | 1.203 | 0.697 | 0.595 | 0.702 | 1.081 | 0.57 | 1.82 | 0.937 | 1.864 | 0.522 | 1.014 | 1.33 | 1.068 | 1.016 | 1.149 | 0.911 | 1.132 | 0.295 | 0.62 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9632
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.360
|
0.226
|
0.018
|
0.679
|
0.145
|
0.354
|
0.223
|
0.021
|
0.409
|
0.064
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009788
|
1.000
|
1.000
|
Hsc_gene_25318.t1
|
Hsc_gene_25318.t1;Hsc_gene_25318.t2
|
— |
H1UBN0.1 Copine-7 [Rattus norvegicus]
|
KAI1732724.1 copine domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005544
|
GO:0005575_0.889|GO:0110165_0.884|GO:0016020_0.764|GO:0008150_0.716|GO:0009987_0.625|GO:0043226_0.576|GO:0071944_0.546|GO:0043227_0.543|GO:0005886_0.530
|
IPR000008+180-240+|IPR010734+303-489+|IPR035892+158-243+|IPR036465+287-460+|IPR045052+5-505+
|
— |
PF00168+180-240+C2_domain|PF07002+303-489+Copine
|
— |
PTHR10857+5-505+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-522
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.759
|
57162.880
|
7.921
|
11.500
|
20.115
|
10.920
|
43.103
|
56.897
|
12.069
|
8.046
|
52.490
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
744.745
|
1332.058
|
705.304
|
686.143
|
712.646
|
819.074
|
1606.692
|
690.215
|
498.579
|
427.276
|
457.834
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.147
|
-1.094
|
— | — |
0.215
|
0.983
|
-0.353
|
1.362
|
— | — | — | — | — |
No JSON data available for plots.