Hg_chrom5_TN10mRNA_10236
Organism: Heterodera glycines Gene Locus: chr5:6247814-6249686 Feature type: polypeptideProtein Sequence
Length: 266
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.831 | 0.437 | 0.889 | 0.13 | 1.316 | 0.482 | 1.074 | 0.94 | 1.003 | 0.61 | 1.538 | 2.433 | 0.94 | 1.229 | 2.685 | 1.02 | 0.863 | 0.342 | 0.578 | 0.995 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9633
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Egg_ppJ2_pJ2_J3_J4
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RKRK,REEKRAR,RRVVVDYERGRTQKK,RRLGGGKGDTRRMRE,KKWLPRRLGGGKGDTRRMR,STKRRSRSRSRERSSRRSRSRDRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.897
|
0.123
|
0.003
|
0.184
|
0.111
|
0.050
|
0.023
|
0.005
|
0.069
|
0.284
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009789
|
1.000
|
1.000
|
Hsc_gene_25317.t2
|
Hsc_gene_25317.t1;Hsc_gene_25317.t2;Hsc_gene_25317.t3;Hsc_gene_25317.t4
|
— |
P17133.2 U1 small nuclear ribonucleoprotein 70 kDa [Drosophila melanogaster]
|
KAF7635005.1 RRM domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003676|GO:0003723|GO:0030619
|
GO:0005575_0.906|GO:0110165_0.906|GO:0005622_0.864|GO:0043226_0.831|GO:0016020_0.822|GO:0043229_0.822|GO:0008150_0.771|GO:0043227_0.744|GO:0043231_0.736|GO:0005634_0.702|GO:0009987_0.678|GO:0008152_0.605|GO:0044238_0.605|GO:0006139_0.601|GO:0043170_0.598|GO:0090304_0.593|GO:0009058_0.588|GO:0009059_0.582|GO:0010467_0.582|GO:0044237_0.582|GO:0044249_0.582|GO:0003674_0.561|GO:0016070_0.561|GO:0005488_0.533|GO:0034654_0.528|GO:0141187_0.524|GO:0032774_0.520
|
IPR000504+102-179_103-175_104-172+|IPR012677+89-212+|IPR022023+3-93+|IPR034143+101-190+|IPR035979+83-200+|IPR051183+5-265+
|
SM00360+103-175+
|
PF00076+104-172+RNA_recognition_motif|PF12220+3-93+U1_small_nuclear_ribonucleoprotein_of_70kDa_MW_N_terminal
|
G3DSA:3.30.70.330:FF:000132+89-211+Small_nuclear_ribonucleoprotein_U11/U12_subunit_35
|
PTHR13952+5-265+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-88;162-266
|
1.000
|
89-161
|
9qeq_b
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.538
|
30512.900
|
11.020
|
30.500
|
37.970
|
9.398
|
54.135
|
45.865
|
25.188
|
12.782
|
44.361
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
yellow
|
1862.762
|
3702.472
|
2657.510
|
2614.946
|
2267.730
|
1828.670
|
1153.749
|
1798.784
|
1871.486
|
737.024
|
1223.222
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.708
|
-0.639
|
— |
-0.238
|
-0.296
|
-0.655
|
— |
-0.500
|
— | — | — | — | — |
No JSON data available for plots.