SCN Proteipedia

Hg_chrom5_TN10mRNA_10238

Organism: Heterodera glycines Gene Locus: chr5:6258381-6264504 Feature type: polypeptide

Protein Sequence

Length: 1,106

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.915	0.988	0.953	0.624	1.085	1.901	0.678	1.175	0.884	1.344	0.836	1.276	1.557	0.748	1.605	0.723	0.726	1.055	0.765	0.718	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9635	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	19-Not_Clustered	0.826

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	KRPR,RKFDAFARVIQRAFRR,RRERLYFAAAVVKFDRRFR	—	—	—	—	—	—	0.000	—	—	0.258	0.094	0.019	0.679	0.112	0.340	0.155	0.011	0.445	0.111

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009790	1.000	1.000	Hsc_gene_25315.t1	Hsc_gene_25315.t1	—	E9Q634.1 Unconventional myosin-Ie [Mus musculus]	KAI1701786.1 myosin head (motor domain) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003774\|GO:0005515\|GO:0005524\|GO:0016459	GO:0005575_0.907\|GO:0110165_0.905\|GO:0008150_0.888\|GO:0009987_0.838\|GO:0005622_0.827\|GO:0043226_0.737\|GO:0043229_0.713\|GO:0016020_0.699\|GO:0071944_0.692\|GO:0003674_0.651\|GO:0005737_0.622\|GO:0016043_0.604\|GO:0071840_0.604\|GO:0005488_0.595\|GO:0051179_0.588\|GO:0043228_0.584\|GO:0043232_0.584\|GO:0005886_0.576\|GO:0005856_0.520\|GO:0051234_0.514	IPR001452+1049-1106_1052-1105_1057-1104_1066-1081_1083-1092_1094-1106+\|IPR001609+6-694_12-693_14-680_42-61_98-123_144-171_381-409_434-462+\|IPR010926+731-937_733-908+\|IPR027417+11-720+\|IPR036028+1039-1105+\|IPR036961+12-623+	SM00242+6-694+\|SM00326+1052-1105+	PF00063+14-680+Myosin_head_(motor_domain)\|PF06017+733-908+Unconventional_myosin_tail,_actin-_and_lipid-binding\|PF14604+1057-1104+Variant_SH3_domain	G3DSA:1.10.10.820:FF:000001+200-256+Myosin_heavy_chain\|G3DSA:1.20.58.530:FF:000007+393-580+Myosin_IE\|G3DSA:2.30.30.40:FF:000072+1041-1106+Unconventional_Myosin_IB	PTHR13140+9-1028+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-1;909-1063;1102-1106	2.000	2-908;1064-1101	6ui4_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.689	126466.540	8.930	31.000	27.486	11.392	48.644	51.356	15.732	11.754	45.208

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	turquoise	1268.935	2865.140	1087.676	881.223	955.811	2184.990	2123.439	2040.877	353.969	733.928	571.089

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.626	-1.838	-0.196	—	1.208	—	—	—	—	—	—	—	—

No JSON data available for plots.

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