Hg_chrom5_TN10mRNA_10239
Organism: Heterodera glycines Gene Locus: chr5:6270800-6272360 Feature type: polypeptideProtein Sequence
Length: 341
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.682 | 1.023 | 0.96 | 0.607 | 1.173 | 0.978 | 1.047 | 0.88 | 1.499 | 1.466 | 0.755 | 1.725 | 0.978 | 1.015 | 1.795 | 0.545 | 0.961 | 0.666 | 0.902 | 0.863 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9636
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — |
12-32
|
0.975
|
— | — | — | — |
0.000
|
— | — |
0.516
|
0.328
|
0.007
|
0.625
|
0.051
|
0.062
|
0.053
|
0.015
|
0.112
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004131
|
2.000
|
1.000
|
Hsc_gene_25314.t1
|
Hsc_gene_25314.t1
|
— |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
AAL78213.1 probable protein kinase Hgg-20 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.866|GO:0110165_0.866|GO:0005622_0.810|GO:0005737_0.742|GO:0008150_0.736|GO:0009987_0.667|GO:0003674_0.658|GO:0043226_0.651|GO:0043229_0.636|GO:0016020_0.611|GO:0003824_0.596|GO:0016740_0.540|GO:0043227_0.529|GO:0065007_0.514|GO:0050789_0.503|GO:0140096_0.501
|
IPR000719+18-308_18-319_20-253+|IPR011009+15-316+|IPR017441+24-47+|IPR050235+17-331+
|
SM00220+18-308+
|
PF00069+20-253+Protein_kinase_domain
|
— |
PTHR11909+17-331+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
320-341
|
1.000
|
1-319
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
38638.470
|
8.678
|
8.000
|
27.859
|
9.384
|
45.748
|
54.252
|
15.543
|
12.317
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
628.983
|
11.574
|
12.224
|
15.667
|
39.938
|
1150.689
|
41.770
|
2471.505
|
1.382
|
1347.001
|
770.307
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
1.318
|
4.863
|
-4.773
|
0.991
|
-5.740
|
-10.161
|
3.827
|
-4.680
|
— | — |
No JSON data available for plots.