SCN Proteipedia

Hg_chrom5_TN10mRNA_10240

Organism: Heterodera glycines Gene Locus: chr5:6276420-6280161 Feature type: polypeptide

Protein Sequence

Length: 694

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.62	1.407	1.153	0.795	1.033	1.182	0.463	1.873	1.249	1.889	0.786	1.271	1.761	0.637	1.147	0.7	0.709	0.83	1.33	0.848	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9637	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.375	0.129	0.006	0.707	0.147	0.262	0.170	0.017	0.101	0.089

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002864	2.000	1.000	Hsc_gene_25313.t1	Hsc_gene_25313.t1;Hsc_gene_25313.t2	—	—	KAI1719171.1 spc97 / spc98 family domain-containing protein [Ditylenchus destructor]	No	-0.050

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0000226\|GO:0000922\|GO:0005815\|GO:0007020\|GO:0043015	GO:0008150_0.953\|GO:0005575_0.898\|GO:0009987_0.898\|GO:0110165_0.893\|GO:0005622_0.829\|GO:0016020_0.803\|GO:0005737_0.791\|GO:0043226_0.766\|GO:0032501_0.759\|GO:0071840_0.752\|GO:0016043_0.748\|GO:0043229_0.747\|GO:0032502_0.746\|GO:0048856_0.746\|GO:0043227_0.730\|GO:0007275_0.721\|GO:0043231_0.714\|GO:0048869_0.711\|GO:0048731_0.710\|GO:0030154_0.709\|GO:0007399_0.698\|GO:0044085_0.693\|GO:0022008_0.692\|GO:0048513_0.689\|GO:0022607_0.687\|GO:0048699_0.686\|GO:0043933_0.680\|GO:0048870_0.680\|GO:0065003_0.678\|GO:0016477_0.676\|GO:0007417_0.674\|GO:0001764_0.670\|GO:0007420_0.670\|GO:0060322_0.670\|GO:0005829_0.604\|GO:0005634_0.593\|GO:0043228_0.593\|GO:0043232_0.593\|GO:0005856_0.567\|GO:0031974_0.566\|GO:0043233_0.566\|GO:0070013_0.565\|GO:0099080_0.564\|GO:0031981_0.560\|GO:0099081_0.556\|GO:0099512_0.556\|GO:0015630_0.555\|GO:0099513_0.554\|GO:0005654_0.553\|GO:0005874_0.549\|GO:0005815_0.548\|GO:0005814_0.545\|GO:0005881_0.545\|GO:0005813_0.540	IPR007259+52-621+\|IPR041470+59-359+\|IPR042241+367-646+	—	PF17681+59-359+Gamma_tubulin_complex_component_N-terminal	—	PTHR19302+52-621+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-694	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.574	80944.160	6.563	1.000	27.089	14.697	46.974	53.026	14.553	12.536	41.931

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	872.516	1019.407	716.377	826.536	1276.476	1091.000	2307.331	788.617	230.774	634.522	461.487

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.739	-0.440	0.315	0.595	-0.212	1.091	-0.571	1.690	—	—	—	—	—

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