Hg_chrom5_TN10mRNA_10244
Organism: Heterodera glycines Gene Locus: chr5:6295343-6296856 Feature type: polypeptideProtein Sequence
Length: 311
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.897 | 0.972 | 0.234 | 0.998 | 0.643 | 1.814 | 2.871 | 0.322 | 0.643 | 0.695 | 0.341 | 0.757 | 0.625 | 3.092 | 0.656 | 0.551 | 0.791 | 0.731 | 0.0 | 0.473 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9641
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
15-37
|
0.957
|
26-96
|
0.872
|
— | — |
0.007
|
— | — |
0.045
|
0.066
|
0.010
|
0.110
|
0.513
|
0.231
|
0.314
|
0.003
|
0.673
|
0.188
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009793
|
1.000
|
1.000
|
Hsc_gene_25308.t1
|
Hsc_gene_25308.t1
|
— |
P20631.1 Cuticle collagen 13 [Caenorhabditis elegans]
|
KAK5984553.1 Cuticular collagen [Trichostrongylus colubriformis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
— |
IPR002486+17-69_20-68+|IPR008160+173-227_237-294+|IPR050632+22-309+
|
SM01088+17-69+
|
PF01391+173-227_237-294+Collagen_triple_helix_repeat_(20_copies)|PF01484+20-68+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+22-309+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-4;117-311
|
1.000
|
5-116
|
3hr2_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.900
|
30080.600
|
7.445
|
2.000
|
11.254
|
4.502
|
31.190
|
68.810
|
6.109
|
5.145
|
69.775
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
darkred
|
13029.871
|
8.089
|
6.793
|
5.404
|
3551.239
|
144827.800
|
902.739
|
341.305
|
0.000
|
889.421
|
508.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
9.332
|
5.364
|
-7.312
|
-8.866
|
— |
-10.612
|
— |
2.241
|
— | — |
No JSON data available for plots.