Hg_chrom5_TN10mRNA_10246
Organism: Heterodera glycines Gene Locus: chr5:6301210-6306036 Feature type: polypeptideProtein Sequence
Length: 970
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.803 | 0.959 | 0.712 | 0.818 | 1.168 | 1.031 | 0.822 | 1.392 | 0.916 | 1.059 | 0.906 | 1.031 | 1.088 | 1.031 | 1.83 | 1.62 | 0.896 | 0.843 | 0.397 | 0.334 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9643
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRVRSMRHSVRRKFFK,KRRKRQKKSEKMDQERRTK,RRKRQKKSEKMDQERRTKT,RKRQKKSEKMDQERRTKTK,PKGTNGGKRRKRQKKSEKMDQERR
|
39-59
|
0.996
|
44-64
|
0.999
|
— | — |
0.000
|
— | — |
0.220
|
0.208
|
0.031
|
0.657
|
0.201
|
0.253
|
0.341
|
0.030
|
0.498
|
0.090
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009795
|
1.000
|
1.000
|
Hsc_gene_25305.t1
|
Hsc_gene_25305.t1;Hsc_gene_25306.t1
|
— |
Q20498.3 GTPase-activating protein rrc-1 [Caenorhabditis elegans]
|
KAF8354830.1 rrc-1 [Pristionchus pacificus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007165
|
GO:0008150_0.837|GO:0005575_0.801|GO:0110165_0.799|GO:0005622_0.750|GO:0009987_0.728|GO:0065007_0.716|GO:0050789_0.643|GO:0003674_0.635|GO:0050794_0.631|GO:0005488_0.602|GO:0005737_0.546|GO:0016020_0.535|GO:0005515_0.527|GO:0050896_0.514|GO:0043226_0.505
|
IPR000198+401-617_418-614_423-579+|IPR001452+233-310_236-309+|IPR008936+366-621_397-617+|IPR036028+230-310+|IPR051576+65-577+
|
SM00324+418-614+|SM00326+236-309+
|
PF00620+423-579+RhoGAP_domain
|
— |
PTHR15729+65-577+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-140;628-970
|
1.000
|
141-627
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.918
|
107430.530
|
10.103
|
52.500
|
28.660
|
8.351
|
53.608
|
46.392
|
17.732
|
10.928
|
51.959
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
646.580
|
3194.254
|
520.685
|
692.092
|
387.201
|
388.127
|
162.251
|
515.859
|
95.781
|
559.278
|
360.636
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.848
|
-2.344
|
0.520
|
-0.869
|
— |
-1.249
|
— |
-1.525
|
— | — | — | — |
6.935
|
No JSON data available for plots.