Hg_chrom5_TN10mRNA_10247
Organism: Heterodera glycines Gene Locus: chr5:6306722-6307905 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.964 | 1.413 | 0.502 | 0.0 | 1.105 | 1.417 | 0.855 | 0.829 | 0.982 | 0.896 | 1.423 | 0.975 | 1.228 | 2.125 | 1.353 | 0.789 | 0.725 | 0.419 | 1.275 | 0.975 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9644
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.955
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — |
7-67
|
0.985
|
— | — |
0.000
|
— | — |
0.179
|
0.973
|
0.041
|
0.161
|
0.015
|
0.035
|
0.011
|
0.011
|
0.086
|
0.018
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009796
|
1.000
|
1.000
|
Hsc_gene_25304.t1
|
Hsc_gene_25304.t1
|
— |
Q9Z1P6.3 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 [Mus musculus]
|
KAH7717511.1 Protein F45H10.3 [Aphelenchus avenae]
|
No
|
-0.600
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005743|GO:0042773
|
GO:0005575_0.909|GO:0110165_0.901|GO:0005622_0.874|GO:0043226_0.831|GO:0043229_0.829|GO:0016020_0.816|GO:0005737_0.807|GO:0043227_0.794|GO:0043231_0.781|GO:0005739_0.580
|
IPR009947+18-158_54-103+
|
— |
PF07347+54-103+NADH:ubiquinone_oxidoreductase_subunit_B14.5a_(Complex_I-B14.5a)
|
— |
PTHR12485+18-158+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-181
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.866
|
20441.280
|
10.576
|
13.500
|
27.072
|
11.050
|
48.619
|
51.381
|
17.680
|
9.392
|
48.066
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1452.708
|
896.338
|
1209.146
|
1237.863
|
1678.398
|
1570.653
|
1409.314
|
1487.991
|
1225.299
|
1877.984
|
1598.262
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.202
|
0.329
|
0.143
|
0.407
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.