Hg_chrom5_TN10mRNA_10252
Organism: Heterodera glycines Gene Locus: chr5:6314448-6316698 Feature type: polypeptideProtein Sequence
Length: 355
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.917 | 2.031 | 1.229 | 0.389 | 1.08 | 0.722 | 0.939 | 0.563 | 1.565 | 0.685 | 0.64 | 1.16 | 1.33 | 0.217 | 1.38 | 1.288 | 1.339 | 0.854 | 0.217 | 0.911 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9648
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.750
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.360
|
0.235
|
0.138
|
0.604
|
0.122
|
0.275
|
0.204
|
0.035
|
0.294
|
0.589
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009798
|
1.000
|
1.000
|
Hsc_gene_25299.t1
|
Hsc_gene_25299.t1;Hsc_gene_25300.t1
|
— |
Q9X248.1 3-oxoacyl-[acyl-carrier-protein] reductase FabG [Thermotoga maritima MSB8]
|
KAI1704495.1 enoyl-(Acyl carrier protein) reductase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.735|GO:0003674_0.699|GO:0005575_0.665|GO:0110165_0.655|GO:0008152_0.578|GO:0009987_0.569|GO:0005622_0.568|GO:0003824_0.540|GO:0005737_0.521|GO:0016020_0.513
|
IPR002347+39-136_40-57_118-129_251-270_272-289_309-329+|IPR036291+35-343+
|
— |
PF00106+39-136+short_chain_dehydrogenase|PF13561+199-343+Enoyl-(Acyl_carrier_protein)_reductase
|
— |
PTHR44115+202-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-41;126-180
|
2.000
|
42-125;181-355
|
1xhl_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
39145.240
|
5.027
|
-6.000
|
25.352
|
9.296
|
54.085
|
45.915
|
12.113
|
13.239
|
56.338
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
222.936
|
97.853
|
93.958
|
220.588
|
72.756
|
26.026
|
119.914
|
130.818
|
615.228
|
228.208
|
394.074
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.036
|
1.339
|
-1.634
|
-1.467
|
2.214
|
2.230
|
— | — | — | — | — | — |
No JSON data available for plots.