SCN Proteipedia

Hg_chrom5_TN10mRNA_10254

Organism: Heterodera glycines Gene Locus: chr5:6322422-6328334 Feature type: polypeptide

Protein Sequence

Length: 557

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.023	1.086	0.294	0.743	1.077	1.473	0.855	2.424	0.678	0.946	0.952	1.056	1.396	1.485	1.209	1.59	1.177	0.299	0.276	0.317	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9650	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	7-Not_Clustered	0.839

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RRQFECVKCGKRFKRS	—	—	5-38	1.000	—	—	0.000	—	—	0.822	0.105	0.009	0.311	0.021	0.016	0.029	0.034	0.058	0.117

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009800	1.000	1.000	Hsc_gene_25297.t1	—	—	Q9N658.1 Zinc finger protein sens [Drosophila melanogaster]	KAI3417991.1 Zinc finger, C2H2 type [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.954\|GO:0050789_0.943\|GO:0065007_0.943\|GO:0009987_0.931\|GO:0050794_0.931\|GO:0003674_0.927\|GO:0003676_0.927\|GO:0005488_0.927\|GO:0097159_0.927\|GO:0008152_0.917\|GO:0019222_0.917\|GO:0031323_0.917\|GO:0044237_0.917\|GO:0044238_0.911\|GO:0080090_0.911\|GO:0043170_0.908\|GO:0060255_0.908\|GO:0006139_0.906\|GO:0009058_0.906\|GO:0009059_0.906\|GO:0010467_0.906\|GO:0016070_0.906\|GO:0044249_0.906\|GO:0090304_0.906\|GO:0034654_0.905\|GO:0032774_0.902\|GO:0141187_0.902\|GO:0009889_0.901\|GO:0010468_0.901\|GO:0010556_0.901\|GO:0031326_0.901\|GO:0005575_0.895\|GO:0110165_0.894\|GO:0006351_0.893\|GO:0006355_0.893\|GO:0019219_0.893\|GO:0051252_0.893\|GO:2001141_0.893\|GO:0003677_0.885\|GO:0043226_0.884\|GO:0043565_0.884\|GO:0005622_0.881\|GO:0043229_0.881\|GO:0003690_0.877\|GO:1990837_0.877\|GO:0016020_0.875\|GO:0032502_0.874\|GO:0048856_0.874\|GO:0032501_0.870\|GO:0006357_0.851\|GO:0006366_0.851\|GO:0007275_0.843\|GO:0043227_0.837\|GO:0030154_0.832\|GO:0048869_0.832\|GO:0043231_0.829\|GO:0048519_0.829\|GO:0048731_0.828\|GO:0000976_0.827\|GO:0000977_0.827\|GO:0001067_0.827\|GO:0048523_0.823\|GO:0009892_0.817\|GO:0010605_0.817\|GO:0045934_0.817\|GO:0051253_0.817\|GO:0009890_0.815\|GO:0010558_0.815\|GO:0031324_0.815\|GO:0031327_0.815\|GO:0045892_0.815\|GO:0140110_0.815\|GO:1902679_0.815\|GO:0005634_0.810\|GO:0048513_0.802\|GO:0003700_0.793\|GO:0000122_0.791\|GO:0007399_0.791\|GO:0022008_0.787\|GO:0048468_0.778\|GO:0000785_0.771\|GO:0000981_0.771\|GO:0005694_0.771\|GO:0043228_0.771\|GO:0043232_0.771\|GO:0048699_0.762\|GO:0009653_0.755\|GO:0030182_0.744\|GO:0016043_0.720\|GO:0071840_0.720\|GO:0048666_0.716\|GO:0005515_0.715\|GO:0009887_0.703\|GO:0003002_0.700\|GO:0007389_0.700\|GO:0030030_0.700\|GO:0031175_0.700\|GO:0048646_0.700\|GO:0120036_0.700\|GO:0006915_0.697\|GO:0007423_0.697\|GO:0008219_0.697\|GO:0012501_0.697\|GO:0000902_0.695\|GO:0043067_0.695\|GO:0001654_0.693\|GO:0048880_0.693\|GO:0150063_0.693\|GO:0042981_0.690\|GO:0045165_0.690\|GO:0048812_0.690\|GO:0048858_0.690\|GO:0120039_0.690\|GO:0007409_0.688\|GO:0048667_0.688\|GO:0061564_0.688\|GO:0090596_0.686\|GO:0043069_0.685\|GO:0043066_0.683\|GO:0007411_0.681\|GO:0097485_0.681\|GO:0048592_0.677\|GO:0008134_0.676\|GO:0046530_0.674\|GO:0001709_0.670\|GO:0001745_0.670\|GO:0001751_0.670\|GO:0001754_0.670\|GO:0007422_0.670\|GO:0008052_0.670\|GO:0008407_0.670\|GO:0008594_0.670\|GO:0010160_0.670\|GO:0016360_0.670\|GO:0022416_0.670\|GO:0042051_0.670\|GO:0042461_0.670\|GO:0042462_0.670\|GO:0048645_0.670\|GO:0048749_0.670\|GO:0048859_0.670\|GO:0060581_0.670\|GO:0060582_0.670\|GO:0140297_0.670\|GO:0043425_0.650	IPR013087+381-403_381-408_383-403_409-431_409-436_411-431_437-459_437-464_439-459_465-487_465-492_467-488+\|IPR036236+379-431_418-474+	SM00355+381-403_409-431_437-459_465-487+	PF00096+381-403_409-431_437-459_465-487+Zinc_finger,_C2H2_type	G3DSA:3.30.160.60:FF:000100+461-488+Zinc_finger_45-like\|G3DSA:3.30.160.60:FF:000208+408-433+zinc_finger_protein_Gfi-1b\|G3DSA:3.30.160.60:FF:000432+434-460+zinc_finger_protein_Gfi-1b_isoform_X1\|G3DSA:3.30.160.60:FF:001228+379-404+Zinc_finger_protein_236	PTHR23235+64-452+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-111;278-372;483-557	2.000	112-277;373-482	2kmk_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.952	60945.350	10.183	36.500	25.135	11.311	53.860	46.140	17.056	8.079	52.424

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	328.581	451.065	542.472	196.891	51.777	30.305	55.531	217.138	16.162	845.978	490.342

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	—	-1.333	-1.354	-1.956	-0.758	0.884	2.744	-1.827	-5.818	—	-3.584	—	—

No JSON data available for plots.

Back to Browser