Hg_chrom5_TN10mRNA_10258
Organism: Heterodera glycines Gene Locus: chr5:6334200-6335207 Feature type: polypeptideProtein Sequence
Length: 175
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.399 | 1.595 | 1.351 | 1.182 | 1.048 | 1.172 | 0.34 | 0.857 | 1.524 | 1.39 | 0.779 | 2.017 | 1.587 | 1.099 | 1.05 | 0.653 | 0.656 | 1.039 | 1.319 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9654
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.607
|
0.209
|
0.179
|
0.674
|
0.134
|
0.067
|
0.075
|
0.023
|
0.133
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004139
|
2.000
|
1.000
|
Hsc_gene_25295.t1
|
Hsc_gene_25295.t1
|
— | — |
KAI1700431.1 skp1 family, dimerization domain-containing protein [Ditylenchus destructor]
|
PCI31026
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.882|GO:0009987_0.722|GO:0065007_0.641|GO:0050789_0.634|GO:0050794_0.581|GO:0005575_0.578|GO:0110165_0.575|GO:0050896_0.550|GO:0051716_0.535
|
IPR011333+7-174+|IPR016072+127-173+|IPR016897+1-174_13-172+|IPR036296+99-172+
|
— |
PF01466+127-173+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+13-172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-175
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
20549.670
|
4.843
|
-4.500
|
25.714
|
13.143
|
45.714
|
54.286
|
12.000
|
13.714
|
45.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
358.230
|
4.591
|
3.961
|
11.256
|
28.288
|
414.482
|
17.360
|
681.860
|
1.382
|
1130.544
|
646.618
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.156
|
1.621
|
1.296
|
3.887
|
-4.567
|
0.606
|
-5.148
|
-9.895
|
— |
-4.898
|
— | — |
No JSON data available for plots.