SCN Proteipedia

Hg_chrom5_TN10mRNA_10259

Organism: Heterodera glycines Gene Locus: chr5:6342618-6345748 Feature type: polypeptide

Protein Sequence

Length: 495

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.822	1.362	0.661	0.766	1.582	0.725	0.697	1.717	1.122	2.102	0.459	1.307	0.898	0.777	1.525	0.924	0.662	0.857	0.777	0.535	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9655	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	13-Not_described	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	—	—	—	—	—	—	—	0.000	—	—	0.463	0.210	0.007	0.669	0.177	0.161	0.166	0.007	0.144	0.064

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009803	1.000	1.000	Hsc_gene_25294.t1	Hsc_gene_25294.t1	—	Q5QJ74.2 Tubulin-specific chaperone cofactor E-like protein [Homo sapiens]	KAH7731984.1 Leucine Rich Repeat family protein [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005515	GO:0008150_0.948\|GO:0009987_0.901\|GO:0003674_0.851\|GO:0050896_0.797\|GO:0008152_0.796\|GO:0005488_0.787\|GO:0032501_0.778\|GO:0044238_0.775\|GO:0044237_0.768\|GO:0009058_0.764\|GO:0005515_0.756\|GO:0032502_0.755\|GO:0048856_0.755\|GO:0043170_0.751\|GO:0071840_0.749\|GO:0016043_0.743\|GO:0044249_0.741\|GO:0007275_0.737\|GO:0019538_0.735\|GO:0009059_0.729\|GO:0048731_0.721\|GO:0010467_0.719\|GO:0030154_0.718\|GO:0048869_0.718\|GO:0048468_0.714\|GO:0006996_0.707\|GO:0007399_0.700\|GO:0022008_0.698\|GO:0009653_0.692\|GO:0040007_0.690\|GO:0048699_0.690\|GO:0003008_0.689\|GO:0030030_0.689\|GO:0120036_0.689\|GO:0030182_0.688\|GO:0048666_0.685\|GO:0048589_0.684\|GO:0007010_0.683\|GO:0007017_0.681\|GO:0009791_0.679\|GO:0031175_0.679\|GO:0000902_0.678\|GO:0051604_0.678\|GO:0000226_0.677\|GO:0007610_0.676\|GO:0003012_0.674\|GO:0048667_0.674\|GO:0048812_0.674\|GO:0048858_0.674\|GO:0120039_0.674\|GO:0006457_0.673\|GO:0007409_0.670\|GO:0007422_0.670\|GO:0007626_0.670\|GO:0008344_0.670\|GO:0014889_0.670\|GO:0030534_0.670\|GO:0043500_0.670\|GO:0048934_0.670\|GO:0048935_0.670\|GO:0048936_0.670\|GO:0061564_0.670\|GO:0051082_0.650	IPR001611+207-221_208-229+\|IPR029071+399-484+\|IPR032675+105-232_234-378+\|IPR050836+130-364+	—	PF13516+207-221+Leucine_Rich_repeat	—	PTHR46652+130-364+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25	1.000	26-495	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.509	55837.120	6.063	-4.500	27.071	9.495	46.263	53.737	13.939	13.131	44.848

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	turquoise	1843.976	2332.941	3655.843	952.181	416.694	1226.279	543.352	6947.902	421.266	1723.247	1165.255

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.420	-1.430	-1.833	-1.224	1.571	-1.165	2.396	-3.534	—	—	—	—	—

No JSON data available for plots.

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