Hg_chrom5_TN10mRNA_10260
Organism: Heterodera glycines Gene Locus: chr5:6346933-6348546 Feature type: polypeptideProtein Sequence
Length: 278
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.711 | 0.586 | 1.046 | 0.62 | 0.959 | 0.738 | 1.028 | 1.978 | 1.359 | 1.264 | 0.927 | 1.904 | 0.999 | 0.553 | 2.202 | 1.028 | 0.708 | 0.491 | 1.384 | 1.164 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9656
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RDAKRGK,KRRRLSHKSEVRRKAL,RRFISSKTGKHRRQRKKTH,HRTGKMKRRRLSHKSEVRRK
|
61-81
|
0.959
|
— | — | — | — |
0.000
|
— | — |
0.641
|
0.284
|
0.027
|
0.500
|
0.122
|
0.086
|
0.056
|
0.014
|
0.165
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004140
|
1.000
|
2.000
|
Hsc_gene_25280.t1;Hsc_gene_25293.t1
|
Hsc_gene_25280.t1;Hsc_gene_25293.t1
|
— |
Q54DF7.1 Probable serine/threonine-protein kinase DDB_G0292354 [Dictyostelium discoideum]
|
KAI3422228.1 hypothetical protein GPALN_012758 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0005575_0.773|GO:0110165_0.763|GO:0005622_0.696|GO:0008150_0.681|GO:0003674_0.655|GO:0009987_0.597|GO:0005737_0.576|GO:0003824_0.575|GO:0016740_0.530|GO:0016020_0.529|GO:0043226_0.521|GO:0043229_0.515
|
IPR000719+1-262_11-246_57-210+|IPR011009+9-270+|IPR050235+2-275+
|
SM00220+11-246+
|
PF00069+57-210+Protein_kinase_domain
|
— |
PTHR11909+2-275+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-278
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.701
|
32083.780
|
10.154
|
20.500
|
32.374
|
13.309
|
49.281
|
50.719
|
20.863
|
11.511
|
42.446
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
1645.872
|
3.687
|
7.022
|
40.049
|
164.216
|
4098.339
|
127.394
|
6860.308
|
2.764
|
2960.738
|
1693.035
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.308
|
2.616
|
2.006
|
4.654
|
-4.997
|
0.630
|
-5.604
|
-10.200
|
— | — | — | — |
No JSON data available for plots.