Hg_chrom5_TN10mRNA_10262
Organism: Heterodera glycines Gene Locus: chr5:6349407-6351317 Feature type: polypeptideProtein Sequence
Length: 303
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.228 | 2.149 | 0.3 | 0.569 | 0.495 | 1.777 | 0.511 | 0.825 | 0.953 | 1.249 | 0.5 | 0.582 | 2.292 | 1.269 | 0.943 | 1.132 | 0.703 | 1.0 | 1.777 | 0.777 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9658
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Not_Clustered
|
0.829
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
endoplasmic_reticulum
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.287
|
0.515
|
0.185
|
0.217
|
0.701
|
0.189
|
0.356
|
0.578
|
0.168
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009804
|
1.000
|
1.000
|
Hsc_gene_25291.t1
|
Hsc_gene_25291.t1
|
— |
Q19951.2 Peroxisomal membrane protein PEX13 [Caenorhabditis elegans]
|
KAI1712421.1 variant SH3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0005777|GO:0016020|GO:0016560
|
GO:0008150_0.817|GO:0005575_0.742|GO:0110165_0.741|GO:0016020_0.685|GO:0005622_0.623|GO:0005737_0.615|GO:0009987_0.597|GO:0043226_0.595|GO:0043227_0.571|GO:0043229_0.567|GO:0043231_0.561|GO:0003674_0.514
|
IPR001452+229-294_232-293_236-290+|IPR007223+82-211+|IPR035463+63-277+|IPR036028+221-296+
|
SM00326+232-293+
|
PF04088+82-211+Peroxin_13,_N-terminal_region|PF14604+236-290+Variant_SH3_domain
|
— |
PTHR19332+63-277+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-33
|
1.000
|
34-303
|
7z0j_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.941
|
33977.770
|
9.893
|
12.500
|
14.191
|
14.851
|
42.574
|
57.426
|
9.571
|
4.620
|
52.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
violet
|
737.048
|
572.300
|
739.698
|
630.479
|
732.129
|
708.315
|
820.687
|
786.405
|
989.869
|
610.929
|
773.332
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.141
|
— |
-0.122
|
0.184
|
— |
0.222
|
— | — | — | — | — | — | — |
No JSON data available for plots.