Hg_chrom5_TN10mRNA_10270
Organism: Heterodera glycines Gene Locus: chr5:6377206-6379146 Feature type: polypeptideProtein Sequence
Length: 331
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.616 | 0.984 | 0.989 | 0.521 | 1.007 | 1.085 | 0.827 | 1.208 | 0.604 | 1.184 | 0.458 | 1.599 | 1.259 | 0.813 | 2.405 | 0.475 | 1.04 | 0.687 | 1.394 | 0.444 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9666
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_Clustered
|
0.675
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRAWLVKLVDFGRARRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.473
|
0.180
|
0.014
|
0.600
|
0.060
|
0.122
|
0.118
|
0.029
|
0.325
|
0.033
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004142
|
1.000
|
2.000
|
Hsc_gene_25277.t1;Hsc_gene_25282.t1
|
Hsc_gene_25276.t1;Hsc_gene_25276.t2;Hsc_gene_25276.t3;Hsc_gene_25277.t1;Hsc_gene_25281.t1;Hsc_gene_25281.t2;Hsc_gene_25282.t1
|
— |
O01761.3 Muscle M-line assembly protein unc-89 [Caenorhabditis elegans]
|
KAI1707869.1 immunoglobulin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.877|GO:0009987_0.815|GO:0003674_0.795|GO:0005575_0.769|GO:0110165_0.769|GO:0065007_0.641|GO:0050789_0.624|GO:0005622_0.620|GO:0032502_0.566|GO:0048856_0.566|GO:0003824_0.544|GO:0050794_0.542|GO:0032501_0.513
|
IPR000719+1-245_6-245_10-245+|IPR011009+9-271+
|
SM00220+6-245+
|
PF00069+10-245+Protein_kinase_domain
|
— |
PTHR24347+12-267+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
260-331
|
1.000
|
1-259
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
37180.190
|
10.216
|
15.000
|
28.701
|
10.272
|
46.828
|
53.172
|
17.221
|
11.480
|
50.453
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
436.289
|
569.898
|
576.927
|
439.350
|
257.776
|
607.263
|
111.170
|
580.087
|
54.525
|
689.446
|
417.337
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.211
|
-0.512
|
-0.284
|
-0.799
|
1.250
|
-2.439
|
— |
-2.238
|
-3.768
|
— | — | — | — |
No JSON data available for plots.