Hg_chrom5_TN10mRNA_10271
Organism: Heterodera glycines Gene Locus: chr5:6381817-6382829 Feature type: polypeptideProtein Sequence
Length: 175
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.465 | 1.595 | 1.351 | 1.182 | 1.048 | 1.172 | 0.34 | 0.857 | 1.524 | 1.39 | 0.779 | 2.017 | 1.587 | 1.099 | 1.05 | 0.653 | 0.562 | 1.039 | 1.319 | 1.176 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9667
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal|nuclear_export_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.607
|
0.208
|
0.178
|
0.679
|
0.129
|
0.066
|
0.073
|
0.024
|
0.131
|
0.034
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004139
|
2.000
|
1.000
|
Hsc_gene_25295.t1
|
Hsc_gene_25295.t1
|
— | — |
KAH7718733.1 SKR-1 protein [Aphelenchus avenae]
|
PCI31026
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006511
|
GO:0008150_0.883|GO:0009987_0.725|GO:0065007_0.643|GO:0050789_0.637|GO:0005575_0.588|GO:0050794_0.585|GO:0110165_0.584|GO:0050896_0.555|GO:0051716_0.539|GO:0005622_0.511|GO:0023052_0.502
|
IPR011333+7-174+|IPR016072+127-173+|IPR016897+1-174_13-172+|IPR036296+99-172+
|
— |
PF01466+127-173+Skp1_family,_dimerisation_domain
|
— |
PTHR11165+13-172+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-175
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.627
|
20519.640
|
4.843
|
-4.500
|
25.714
|
13.143
|
45.143
|
54.857
|
12.000
|
13.714
|
45.143
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
269.980
|
8.563
|
9.971
|
20.928
|
48.441
|
775.798
|
28.001
|
1003.988
|
0.000
|
470.278
|
268.731
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.151
|
1.180
|
1.176
|
4.019
|
-4.783
|
— |
-5.016
|
-9.671
|
5.244
|
— | — | — |
No JSON data available for plots.