SCN Proteipedia

Hg_chrom5_TN10mRNA_10275

Organism: Heterodera glycines Gene Locus: chr5:6388771-6398094 Feature type: polypeptide

Protein Sequence

Length: 1,407

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.959	0.81	0.995	0.466	1.564	1.64	0.897	1.315	0.695	1.028	0.678	1.296	0.869	1.531	1.508	0.914	0.897	0.775	0.765	0.481	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_9671	—	—	1.778	2.000	2.000	1.000	2.000	2.000	2.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	20-Not_Clustered	0.959

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRTLPHSEHDSVVAKTRRA,RREGRQFTVVTMPQKTGRR	—	—	—	—	—	—	0.000	—	—	0.438	0.183	0.045	0.660	0.065	0.075	0.056	0.014	0.385	0.095

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0000873	1.000	5.000	Hsc_gene_25276.t1;Hsc_gene_25276.t2;Hsc_gene_25276.t3;Hsc_gene_25281.t1;Hsc_gene_25281.t2	Hsc_gene_25276.t1;Hsc_gene_25276.t2;Hsc_gene_25276.t3;Hsc_gene_25281.t1;Hsc_gene_25281.t2	—	O01761.3 Muscle M-line assembly protein unc-89 [Caenorhabditis elegans]	KAI1702784.1 immunoglobulin domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0005515\|GO:0005524\|GO:0006468	GO:0008150_0.947\|GO:0009987_0.885\|GO:0005575_0.858\|GO:0110165_0.856\|GO:0065007_0.829\|GO:0050789_0.793\|GO:0003674_0.766\|GO:0050794_0.750\|GO:0005622_0.747\|GO:0005488_0.630\|GO:0050896_0.606\|GO:0043226_0.591\|GO:0043229_0.543\|GO:0051716_0.527\|GO:0023052_0.523\|GO:0048518_0.523\|GO:0007154_0.521\|GO:0005515_0.517\|GO:0032501_0.513\|GO:0008152_0.509\|GO:0005737_0.508\|GO:0016020_0.501	IPR000719+1-303_41-303_60-303+\|IPR003961+1165-1252_1165-1261_1167-1266_1168-1257+\|IPR007110+1070-1148+\|IPR011009+45-334+\|IPR013098+1070-1157+\|IPR013783+1064-1158_1159-1267+\|IPR036116+1163-1265+\|IPR036179+1070-1158+	SM00060+1165-1252+\|SM00220+41-303+	PF00041+1168-1257+Fibronectin_type_III_domain\|PF00069+60-303+Protein_kinase_domain\|PF07679+1070-1157+Immunoglobulin_I-set_domain	G3DSA:2.60.40.10:FF:000032+1066-1163+palladin_isoform_X1	PTHR24342+140-731+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-90;337-938;1029-1073;1275-1407	3.000	91-336;939-1028;1074-1274	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.606	156317.490	5.438	-23.500	29.353	8.387	51.102	48.898	14.499	14.854	51.031

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	magenta	690.011	1208.131	1250.788	898.836	507.683	1185.399	183.437	999.337	71.753	627.381	389.255

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.179	-0.564	-0.368	-0.855	1.238	-2.684	—	-2.302	—	—	—	—	—

No JSON data available for plots.

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