Hg_chrom5_TN10mRNA_10276
Organism: Heterodera glycines Gene Locus: chr5:6398954-6429604 Feature type: polypeptideProtein Sequence
Length: 5,730
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.933 | 0.653 | 1.041 | 0.692 | 1.853 | 1.11 | 0.833 | 0.838 | 1.028 | 0.894 | 0.944 | 0.934 | 0.795 | 1.326 | 1.158 | 0.755 | 1.004 | 1.224 | 0.98 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9672
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
0.991
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
RKSK,KRAEEELGPVESKPRIR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.339
|
0.225
|
0.056
|
0.724
|
0.080
|
0.050
|
0.107
|
0.005
|
0.468
|
0.279
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000874
|
1.000
|
5.000
|
Hsc_gene_25274.t1;Hsc_gene_25274.t2;Hsc_gene_25274.t3;Hsc_gene_25274.t4;Hsc_gene_25274.t5
|
Hsc_gene_25274.t1;Hsc_gene_25274.t2;Hsc_gene_25274.t3;Hsc_gene_25274.t4;Hsc_gene_25274.t5
|
— |
O01761.3 Muscle M-line assembly protein unc-89 [Caenorhabditis elegans]
|
KAI1702784.1 immunoglobulin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.890|GO:0110165_0.882|GO:0008150_0.850|GO:0005622_0.779|GO:0009987_0.775|GO:0003674_0.719|GO:0005737_0.716|GO:0043226_0.681|GO:0005488_0.627|GO:0071840_0.627|GO:0043229_0.624|GO:0005515_0.622|GO:0016043_0.622|GO:0065007_0.585|GO:0043228_0.574|GO:0043232_0.574|GO:0032502_0.573|GO:0048856_0.573|GO:0050789_0.571|GO:0099080_0.563|GO:0099081_0.547|GO:0099512_0.546|GO:0032501_0.510|GO:0006996_0.509|GO:0030154_0.508|GO:0048869_0.508|GO:0007010_0.502
|
IPR003598+86-154_187-254_287-354_485-553_585-655_894-964_1092-1158_1187-1258_1384-1451_1480-1548_1610-1681_1715-1783_1810-1881_2018-2088_2117-2186_2215-2284_2313-2383_2419-2490_2527-2598_2638-2713_2750-2819_2854-2924_2958-3027_3063-3131_3669-3736_3862-3929_3955-4024_4155-4225_4257-4327_4365-4433_4471-4540_4576-4644_4683-4752_4790-4858_4904-4973_5016-5084_5127-5200_5249-5311_5504-5572_5598-5667+|IPR003599+39-165_181-265_281-365_377-463_479-564_579-666_678-765_888-975_987-1074_1086-1169_1181-1269_1283-1367_1378-1462_1474-1559_1604-1692_1709-1794_1804-1892_1905-1997_2012-2099_2111-2197_2209-2295_2307-2394_2413-2501_2521-2609_2632-2725_2744-2830_2848-2935_2952-3038_3057-3142_3370-3455_3468-3548_3557-3647_3663-3747_3756-3843_3856-3940_3949-4035_4046-4132_4149-4236_4251-4338_4359-4444_4465-4551_4570-4655_4677-4763_4784-4869_4898-4984_5010-5095_5121-5211_5237-5322_5496-5581_5592-5678+|IPR003961+5356-5438_5356-5440_5359-5455_5365-5446+|IPR007110+94-159_174-263_275-363_473-562_573-664_882-973_1080-1167_1175-1267_1277-1365_1371-1460_1468-1557_1598-1690_1703-1792_1798-1890_1899-1995_2006-2097_2105-2195_2203-2293_2301-2387_2407-2499_2515-2607_2617-2723_2738-2830_2842-2933_2946-3036_3051-3140_3364-3453_3462-3546_3657-3747_3748-3841_3850-3940_3943-4033_4037-4129_4142-4234_4245-4336_4353-4444_4459-4549_4564-4653_4671-4761_4778-4867_4892-4984_5004-5093_5115-5209_5231-5320_5489-5581_5586-5676+|IPR013098+86-164_174-264_275-364_371-462_473-563_574-665_672-764_882-974_981-1073_1080-1168_1175-1267_1277-1366_1373-1461_1468-1556_1598-1691_1703-1793_1798-1889_1899-1996_2006-2098_2105-2196_2203-2292_2301-2391_2407-2498_2515-2606_2738-2824_2842-2934_2946-3037_3051-3140_3364-3452_3462-3546_3552-3644_3657-3745_3751-3842_3850-3937_3943-4034_4044-4122_4144-4235_4245-4334_4353-4441_4459-4550_4564-4653_4671-4761_4778-4868_4892-4983_5004-5094_5117-5210_5232-5321_5501-5578_5586-5677+|IPR013106+90-149_2317-2378_2754-2814_2962-3022_4580-4639_4687-4747_4794-4851+|IPR013783+74-165_168-271_272-370_371-468_469-564_567-670_671-767_878-979_980-1077_1078-1173_1174-1271_1272-1369_1370-1465_1466-1560_1594-1697_1698-1795_1796-1892_1895-2000_2001-2101_2102-2198_2199-2297_2298-2401_2402-2505_2511-2612_2627-2728_2729-2833_2834-2939_2940-3042_3046-3144_3358-3456_3457-3547_3548-3649_3651-3748_3749-3845_3846-3938_3939-4036_4037-4131_4132-4238_4239-4339_4347-4449_4454-4552_4557-4660_4666-4765_4771-4875_4886-4991_4999-5098_5110-5213_5227-5325_5347-5454_5490-5583_5584-5685+|IPR036116+5353-5459+|IPR036179+86-167_174-268_272-371_368-463_472-564_573-671_672-767_882-981_980-1076_1080-1174_1175-1269_1277-1369_1375-1468_1466-1556_1598-1694_1699-1794_1796-1890_1899-1997_2005-2100_2102-2198_2200-2295_2301-2394_2405-2498_2514-2607_2635-2727_2738-2835_2842-2938_2946-3039_3049-3141_3364-3455_3459-3543_3552-3655_3657-3747_3752-3844_3850-3948_3939-4031_4044-4126_4142-4236_4243-4335_4351-4443_4459-4553_4564-4656_4671-4763_4778-4870_4892-4985_5002-5095_5111-5213_5229-5323_5489-5588_5586-5680+|IPR050958+3781-3987+
|
SM00060+5356-5440+|SM00406+90-149_2317-2378_2754-2814_2962-3022_4580-4639_4687-4747_4794-4851+|SM00408+86-154_187-254_287-354_485-553_585-655_894-964_1092-1158_1187-1258_1384-1451_1480-1548_1610-1681_1715-1783_1810-1881_2018-2088_2117-2186_2215-2284_2313-2383_2419-2490_2527-2598_2638-2713_2750-2819_2854-2924_2958-3027_3063-3131_3669-3736_3862-3929_3955-4024_4155-4225_4257-4327_4365-4433_4471-4540_4576-4644_4683-4752_4790-4858_4904-4973_5016-5084_5127-5200_5249-5311_5504-5572_5598-5667+|SM00409+39-165_181-265_281-365_377-463_479-564_579-666_678-765_888-975_987-1074_1086-1169_1181-1269_1283-1367_1378-1462_1474-1559_1604-1692_1709-1794_1804-1892_1905-1997_2012-2099_2111-2197_2209-2295_2307-2394_2413-2501_2521-2609_2632-2725_2744-2830_2848-2935_2952-3038_3057-3142_3370-3455_3468-3548_3557-3647_3663-3747_3756-3843_3856-3940_3949-4035_4046-4132_4149-4236_4251-4338_4359-4444_4465-4551_4570-4655_4677-4763_4784-4869_4898-4984_5010-5095_5121-5211_5237-5322_5496-5581_5592-5678+
|
PF00041+5365-5446+Fibronectin_type_III_domain|PF07679+86-164_174-264_275-364_371-462_473-563_574-665_672-764_882-974_981-1073_1080-1168_1175-1267_1277-1366_1373-1461_1468-1556_1598-1691_1703-1793_1798-1889_1899-1996_2006-2098_2105-2196_2203-2292_2301-2391_2407-2498_2515-2606_2738-2824_2842-2934_2946-3037_3051-3140_3364-3452_3462-3546_3552-3644_3657-3745_3751-3842_3850-3937_3943-4034_4044-4122_4144-4235_4245-4334_4353-4441_4459-4550_4564-4653_4671-4761_4778-4868_4892-4983_5004-5094_5117-5210_5232-5321_5501-5578_5586-5677+Immunoglobulin_I-set_domain
|
G3DSA:2.60.40.10:FF:000032+879-978_1171-1272_2511-2611_2838-2939_4241-4339_4349-4447_4455-4555_5111-5214+palladin_isoform_X1|G3DSA:2.60.40.10:FF:000080+5226-5324+Myosin_light_chain_kinase,_smooth_muscle|G3DSA:2.60.40.10:FF:000107+1079-1170_1371-1462_1467-1559_1597-1693_2406-2502_2737-2831_3656-3748_5585-5679+Myosin,_light_chain_kinase_a|G3DSA:2.60.40.10:FF:000344+272-367_369-465_1274-1369+Muscle_M-line_assembly_protein_unc-89|G3DSA:2.60.40.10:FF:000345+2942-3039_3047-3143_4139-4238_4667-4765_4774-4871_4888-4986+Muscle_M-line_assembly_protein_unc-89|G3DSA:2.60.40.10:FF:000425+1699-1797_2001-2101_2102-2199_2200-2297_2298-2397_4559-4658+Myosin_light_chain_kinase|G3DSA:2.60.40.10:FF:001409+170-270+Muscle_M-line_assembly_protein_unc-89|G3DSA:2.60.40.10:FF:001436+74-169+Muscle_M-line_assembly_protein_unc-89
|
PTHR45080+3781-3987+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-67;436-497;754-1001;1141-1235;1555-1603;2084-2234;2302-2452;2811-2854;3009-3477;3578-3700;5723-5730
|
10.000
|
68-435;498-753;1002-1140;1236-1554;1604-2083;2235-2301;2453-2810;2855-3008;3478-3577;3701-5722
|
2lqr_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.659
|
635210.980
|
4.654
|
-235.000
|
30.419
|
7.871
|
48.970
|
51.030
|
13.578
|
16.841
|
51.955
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
8459.493
|
22497.083
|
23401.018
|
8568.480
|
2439.638
|
7352.160
|
1607.132
|
15497.319
|
1714.114
|
5213.634
|
3713.840
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.173
|
-1.530
|
-1.341
|
-1.844
|
1.606
|
-2.183
|
0.971
|
-3.126
|
— |
2.513
|
— | — | — |
No JSON data available for plots.