Hg_chrom5_TN10mRNA_10279
Organism: Heterodera glycines Gene Locus: chr5:6434968-6437755 Feature type: polypeptideProtein Sequence
Length: 353
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.12 | 0.856 | 0.721 | 0.586 | 0.755 | 1.162 | 0.776 | 0.85 | 1.196 | 1.608 | 0.858 | 1.5 | 1.259 | 0.49 | 1.85 | 0.769 | 0.975 | 0.816 | 0.872 | 1.25 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9675
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
13-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
endoplasmic_reticulum
|
— |
GTRAAKPKRMPMRI,RKGQLTRQKENKKQRT
|
63-88
|
0.968
|
— | — | — | — |
0.000
|
— | — |
0.067
|
0.207
|
0.030
|
0.369
|
0.642
|
0.291
|
0.259
|
0.128
|
0.328
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003517
|
2.000
|
1.000
|
Hsc_gene_17820.t1
|
Hsc_gene_25271.t1;Hsc_gene_25273.t2;Hsc_gene_25273.t3
|
— | — |
KAI1718517.1 meckelin (Transmembrane protein 67) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0036038|GO:0060271
|
GO:0008150_0.943|GO:0005575_0.904|GO:0110165_0.902|GO:0009987_0.884|GO:0016020_0.843|GO:0065007_0.802|GO:0005622_0.799|GO:0071944_0.789|GO:0050789_0.781|GO:0050896_0.772|GO:0005886_0.771|GO:0050794_0.770|GO:0051179_0.770|GO:0043226_0.769|GO:0006810_0.768|GO:0051234_0.768|GO:0005737_0.748|GO:0043229_0.748|GO:0051716_0.746|GO:0071840_0.730|GO:0016043_0.725|GO:0043227_0.723|GO:0048519_0.710|GO:0043231_0.709|GO:0051641_0.704|GO:0048523_0.700|GO:0006996_0.693|GO:0051649_0.692|GO:0033036_0.690|GO:0044085_0.689|GO:0008104_0.687|GO:0070727_0.687|GO:0016192_0.684|GO:0022607_0.683|GO:0030030_0.683|GO:0051128_0.683|GO:0120036_0.683|GO:0046907_0.682|GO:0007010_0.677|GO:0048193_0.677|GO:0007017_0.676|GO:0007018_0.676|GO:0007049_0.676|GO:0022402_0.676|GO:0033365_0.676|GO:0051640_0.676|GO:0051656_0.676|GO:0070925_0.676|GO:0030031_0.675|GO:0120031_0.675|GO:0000226_0.674|GO:0030705_0.674|GO:0033043_0.674|GO:0051129_0.674|GO:0051648_0.674|GO:0051650_0.674|GO:0051726_0.674|GO:0010564_0.673|GO:0010970_0.673|GO:0031503_0.673|GO:0099111_0.673|GO:0001578_0.670|GO:0005929_0.670|GO:0006903_0.670|GO:0007098_0.670|GO:0010639_0.670|GO:0010824_0.670|GO:0010826_0.670|GO:0010948_0.670|GO:0030990_0.670|GO:0031023_0.670|GO:0032886_0.670|GO:0032991_0.670|GO:0035082_0.670|GO:0035735_0.670|GO:0042073_0.670|GO:0042995_0.670|GO:0044782_0.670|GO:0045786_0.670|GO:0046605_0.670|GO:0046606_0.670|GO:0048199_0.670|GO:0051298_0.670|GO:0051493_0.670|GO:0051494_0.670|GO:0060271_0.670|GO:0061512_0.670|GO:0097712_0.670|GO:0098590_0.670|GO:0120025_0.670|GO:1905349_0.670|GO:0003674_0.647|GO:0005773_0.632|GO:0012505_0.618|GO:0031090_0.599|GO:0031982_0.583|GO:0005783_0.570|GO:0031410_0.562|GO:0097708_0.562|GO:0005488_0.560|GO:0031984_0.558|GO:0005789_0.553|GO:0042175_0.553|GO:0098827_0.553|GO:0008152_0.550|GO:0012506_0.547|GO:0030659_0.547|GO:0044238_0.536|GO:0032501_0.534|GO:0005515_0.516|GO:0043170_0.515|GO:0032502_0.511|GO:0048856_0.511
|
IPR019170+67-234_245-352+
|
— |
PF09773+67-234_245-352+Meckelin_(Transmembrane_protein_67)
|
— |
PTHR21274+245-352+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-353
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.529
|
40126.620
|
10.351
|
25.000
|
24.929
|
11.615
|
44.476
|
55.524
|
16.431
|
8.499
|
44.759
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
61.671
|
62.638
|
72.921
|
40.639
|
11.647
|
36.354
|
14.823
|
91.094
|
1.855
|
144.628
|
83.439
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.761
|
-0.736
|
-1.839
|
1.659
|
-1.284
|
1.217
|
-2.476
|
— |
5.205
|
— | — | — |
No JSON data available for plots.