Hg_chrom5_TN10mRNA_10280
Organism: Heterodera glycines Gene Locus: chr5:6437882-6440081 Feature type: polypeptideProtein Sequence
Length: 338
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.791 | 1.101 | 0.861 | 0.714 | 0.641 | 0.607 | 0.916 | 2.071 | 1.249 | 1.079 | 0.448 | 2.088 | 1.808 | 0.74 | 1.087 | 1.183 | 1.019 | 1.166 | 0.91 | 1.305 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9676
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.135
|
— | — |
0.086
|
0.068
|
0.196
|
0.207
|
0.606
|
0.663
|
0.607
|
0.010
|
0.186
|
0.682
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004143
|
1.000
|
2.000
|
Hsc_gene_13814.t1;Hsc_gene_25269.t1
|
Hsc_gene_25269.t1;Hsc_gene_25270.t1
|
— | — |
KAI1701629.1 lipase (class 2) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016042|GO:0016787
|
— |
IPR002918+22-307_80-297+|IPR029058+48-267_80-261+
|
— |
PF01674+80-297+Lipase_(class_2)
|
— |
PTHR32015+22-307+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.750
|
37853.250
|
7.319
|
6.000
|
21.006
|
16.272
|
42.604
|
57.396
|
12.426
|
8.580
|
52.071
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
blue
|
405.489
|
42.356
|
29.999
|
27.376
|
28.727
|
33.028
|
212.173
|
64.998
|
45.187
|
1575.626
|
919.723
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.721
|
-0.766
|
— | — | — |
2.693
|
0.874
|
1.847
|
-5.229
|
— |
-5.289
|
— | — |
No JSON data available for plots.