Hg_chrom5_TN10mRNA_10283
Organism: Heterodera glycines Gene Locus: chr5:6451099-6452720 Feature type: polypeptideProtein Sequence
Length: 161
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.65 | 0.722 | 0.903 | 0.857 | 1.76 | 0.956 | 0.296 | 1.242 | 1.656 | 1.259 | 1.976 | 1.827 | 1.208 | 0.478 | 1.141 | 1.242 | 0.611 | 0.659 | 0.956 | 0.365 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_9679
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.574
|
0.191
|
0.169
|
0.501
|
0.071
|
0.049
|
0.064
|
0.015
|
0.208
|
0.323
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000875
|
5.000
|
1.000
|
Hsc_gene_9275.t1
|
— | — | — |
CAD2162264.1 unnamed protein product [Meloidogyne enterolobii]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.942|GO:0110165_0.941|GO:0005622_0.894|GO:0016020_0.894|GO:0043226_0.876|GO:0043229_0.852|GO:0043227_0.805|GO:0005737_0.791|GO:0043231_0.789|GO:0003674_0.786|GO:0005488_0.786|GO:0005515_0.763|GO:0042802_0.667|GO:0005634_0.647|GO:0031974_0.590|GO:0031981_0.590|GO:0043233_0.590|GO:0070013_0.590|GO:0005654_0.566
|
IPR052035+85-145+
|
— | — | — |
PTHR46481+85-145+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-161
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.699
|
18747.770
|
9.183
|
7.000
|
36.646
|
9.317
|
55.901
|
44.099
|
21.118
|
15.528
|
37.888
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
blue
|
613.851
|
3.845
|
6.269
|
17.266
|
7.994
|
4.308
|
3.434
|
9.112
|
22.424
|
2649.197
|
1523.437
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.033
|
1.569
|
-1.148
|
— | — | — | — |
-7.017
|
— |
-8.044
|
— | — |
No JSON data available for plots.